Browse Element(s) Details


OsAffx.7993.1.S1_at

Description tigr:9638.m03159
TID=OsAffx.7993.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3566011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7993.1.S1_at--374--4471Chr10:18742027..18742051 (25 bp)
GCCTCGCGCTGGTCGTCTACAGCGA
LOC_Os10g35660
OsAffx.7993.1.S1_at--688--8191Chr10:18741921..18741945 (25 bp)
GGAAGAAGAAGAGCCGATCGCGGCC
LOC_Os10g35660
OsAffx.7993.1.S1_at--1--6711Chr10:18741896..18741920 (25 bp)
GTTCCGATCAGCACCTGCATCCTGG
LOC_Os10g35660
OsAffx.7993.1.S1_at--46--6451Chr10:18741891..18741915 (25 bp)
GATCAGCACCTGCATCCTGGCACTG
LOC_Os10g35660
OsAffx.7993.1.S1_at--820--8371Chr10:18741818..18741842 (25 bp)
GGCGAGGTGAGCATCCCCTGCTTCC
LOC_Os10g35660
OsAffx.7993.1.S1_at--1049--4751Chr10:18741783..18741807 (25 bp)
GCTGCCATTCATCGAGCCGGACTTG
LOC_Os10g35660
OsAffx.7993.1.S1_at--147--531Chr10:18741773..18741797 (25 bp)
ATCGAGCCGGACTTGCCGGAGCTGA
LOC_Os10g35660
OsAffx.7993.1.S1_at--712--3951Chr10:18741766..18741790 (25 bp)
CGGACTTGCCGGAGCTGACCTGGAC
LOC_Os10g35660
OsAffx.7993.1.S1_at--86--10711Chr10:18741761..18741785 (25 bp)
TTGCCGGAGCTGACCTGGACGACCG
LOC_Os10g35660
OsAffx.7993.1.S1_at--20--5671Chr10:18741728..18741752 (25 bp)
GACATTACCGCCACCTTCGATGCCG
LOC_Os10g35660
OsAffx.7993.1.S1_at--883--4971Chr10:18741678..18741702 (25 bp)
GCATCCAATCACACCGGATTCGCCT
LOC_Os10g35660
Target Sequence 
GCCTCGCGCTGGTCGTCTACAGCGAGGGGAGCACCGCCGCCGCGGCGGCGGCCGGCGAGCTCGCTCCGTACTCCATCTCA
TCCCCGGCCGCCACTGCCGACGCGGCGGAAGAAGAAGAGCCGATCGCGGCCGTTCCGATCAGCACCTGCATCCTGGCACT
GCCGCCGCCACCACCACCGCCACCGCCGCCGCCGAGCGATGCCACCGGCGGCGAGGTGAGCATCCCCTGCTTCCCCTTCT
CGCCGCTGCCATTCATCGAGCCGGACTTGCCGGAGCTGACCTGGACGACCGACCTCGACGACATTACCGCCACCTTCGAT
GCCGCCGCCTGCCGCTACCCGAAGCGGCCGCATCCAATCACACCGGATTCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis