Browse Element(s) Details


Os.46649.1.S1_x_at

Description gb:NM_197197.1
DB_XREF= gi:37535753
TID=Os.46649.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46649 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0078O01.15), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g356504/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46649.1.S1_x_at--851--10251Chr10:18735035..18735059 (25 bp)
TTTGTGCAACATTAGTGTACCGCTT
NONE
Os.46649.1.S1_x_at--1120--8731Chr10:18735050..18735529 (25 bp)
TGTACCGCTTACTGGGTCGCATAAA
NONE
Os.46649.1.S1_x_at--782--6871Chr10:18736106..18736130 (25 bp)
GTATTAGCTGAACCGGATGCGCAAA
NONE
Os.46649.1.S1_x_at--520--7811Chr10:18736144..18736168 (25 bp)
GGTCTTGTTATCTAAGCCTATCTTG
NONE
Os.46649.1.S1_x_at--717--4451Chr10:18736159..18736183 (25 bp)
GCCTATCTTGGCTCTGGAGTTCAAC
NONE
Os.46649.1.S1_x_at--132--8051Chr10:18736174..18736198 (25 bp)
GGAGTTCAACTCTCTGGAAATGCAC
NONE
Os.46649.1.S1_x_at--660--8151Chr10:18736189..18736213 (25 bp)
GGAAATGCACGTTGATGCTCCGAAA
NONE
Os.46649.1.S1_x_at--986--10751Chr10:18737959..18737983 (25 bp)
TTGAGCTGCTCCACATGATCATGGC
LOC_Os10g35650
Os.46649.1.S1_x_at--1000--6111Chr10:18738177..18738201 (25 bp)
GAGTGTGTCCAGTAAGGCCTGCTAA
LOC_Os10g35650
Os.46649.1.S1_x_at--239--2951Chr10:18738190..18738214 (25 bp)
AAGGCCTGCTAAGATTCGGAGACCA
LOC_Os10g35650
Os.46649.1.S1_x_at--848--8311Chr10:18738229..18738253 (25 bp)
GGCTCTGAAGTACAAGCTCAACCGG
LOC_Os10g35650
Target Sequence 
TTTGTGCAACATTAGTGTACCGCTTACTGGGTCGCATAAACACAAGTGGATGGGTNCAGCAATCAGAATGTCTCTTNCAA
NGCTTCAGTGGACAGATAGAGGACCANCCTGANCTTNTNAAGTACTCTTGCCAANTGGAATGNANAGTGCGCCCNGGTAA
GGCCTNGCTANGATTTGGAGACCANGAATTACTGNACCNCNNGAGTGTCCNTGANGGNAAGANCAGCAGCAAAGGCTCGG
AAGTATTAGCTGAACCGGATGCGCAAAAACATACCGTTATGGTCTTGTTATCTAAGCCTATCTTGGCTCTGGAGTTCAAC
TCTCTGGAAATGCACGTTGATGCTCCGAAAATCGTCATCCCACACTCCAAGAAAAAGGAAGTCAGGGGGCTGTGTGATGA
GAACAGAAGCCAAGAAGCTCTTGAGCTGCTCCACATGATCATGGCTGATGATGGAGGAGGCTGCAGAGTGTGTCCAGTAA
GGCCTGCTAAGATTCGGAGACCAGGATCAGCAGCAAAGGCTCTGAAGTACAAGCTCAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46649.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis