Browse Element(s) Details


Os.10526.1.S1_a_at

Description gb:AK059343.1
DB_XREF= gi:32969361
TID=Os.10526.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B07, full insert sequence.
FL= gb:AK059343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3571011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10526.1.S1_a_at--763--5951Chr10:18765565..18765589 (25 bp)
GAGAACTGTTCCACTGGACTTCATT
LOC_Os10g35710
Os.10526.1.S1_a_at--523--1151Chr10:18765718..18765742 (25 bp)
AGTCGGTTGCTTTCTATGCAGCTGA
LOC_Os10g35710
Os.10526.1.S1_a_at--784--8891Chr10:18765747..18765771 (25 bp)
TGAGATGTCCTGCTAAGGCCATGGA
LOC_Os10g35710
Os.10526.1.S1_a_at--111--6571Chr10:18765802..18765826 (25 bp)
GATTCTGCCAGGGACGTTGTAAATT
LOC_Os10g35710
Os.10526.1.S1_a_at--398--2711Chr10:18765846..18765870 (25 bp)
AAGCTTGCTTGACGATACTGTTAGA
LOC_Os10g35710
Os.10526.1.S1_a_at--675--5651Chr10:18765877..18765901 (25 bp)
GACAGTGTAGTTCGCTTCGGTTTAG
LOC_Os10g35710
Os.10526.1.S1_a_at--420--3971Chr10:18765894..18765918 (25 bp)
CGGTTTAGCCTGTAATTGCGTTGTA
LOC_Os10g35710
Os.10526.1.S1_a_at--310--10711Chr10:18765909..18765933 (25 bp)
TTGCGTTGTACCTATGTTAACCTGT
LOC_Os10g35710
Os.10526.1.S1_a_at--398--6771Chr10:18765924..18765948 (25 bp)
GTTAACCTGTCTGTCCTGAGATACA
LOC_Os10g35710
Os.10526.1.S1_a_at--315--7051Chr10:18766000..18766024 (25 bp)
GTAACCGTATATGTACTGTCCGTAT
LOC_Os10g35710
Os.10526.1.S1_a_at--181--7011Chr10:18766012..18766036 (25 bp)
GTACTGTCCGTATGCTTTGTTAAAA
LOC_Os10g35710
Target Sequence 
GAGAACTGTTCCACTGGACTTCATTTCCCTGCAGAGCAAATAGAGAACTCTGAGGAGCAGGTGATTCCACTGAAGTCGGT
TGCTTTCTATGCAGCTGACGGGTGAGATGTCCTGCTAAGGCCATGGACCGTGCCTCGTCGCTGCCAGAAACGAGAGGGAT
TCTGCCAGGGACGTTGTAAATTTACTAGAGCAGCTGTAAATAAGCTTGCTTGACGATACTGTTAGAGATGCTGACAGTGT
AGTTCGCTTCGGTTTAGCCTGTAATTGCGTTGTACCTATGTTAACCTGTCTGTCCTGAGATACAATGACAGCCAGTAGAT
GGAACTCCAGCAGAACTGTATAAAGACTGGGTGTTGTAACCGTATATGTACTGTCCGTATGCTTTGTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10526.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis