Browse Element(s) Details


Os.15944.2.S1_x_at

Description gb:NM_197205.1
DB_XREF= gi:37535769
TID=Os.15944.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15944 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative leaf protein (OSJNBa0078O01.10), mRNA.
PROD=putative leaf protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3573011/11expressed protein
LOC_Os10g357502/11pentatricopeptide, putative, expressed
LOC_Os10g357601/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15944.2.S1_x_at--326--6171Chr10:18775577..18775601 (25 bp)
GAGGATGCCTTTTGCCAATACTTGT
LOC_Os10g35730
Os.15944.2.S1_x_at--618--7452Chr10:18784019..18784043 (25 bp)
GTGTCGAAGGCAGCAGATCTCACAA
LOC_Os10g35760
Os.15944.2.S1_x_at--626--2931Chr10:18775665..18775689 (25 bp)
AAGGCACTTGCTTCTGCGAGTAATG
LOC_Os10g35730
Os.15944.2.S1_x_at--531--5291Chr10:18775689..18775713 (25 bp)
GAATGGATACCTGACCTGACGAATG
LOC_Os10g35730
Os.15944.2.S1_x_at--595--5872Chr10:18780859..18780883 (25 bp)
GAGCCTGAACTATTTCGCGGAGCAA
LOC_Os10g35750
Os.15944.2.S1_x_at--141--2371Chr10:18775851..18775875 (25 bp)
AAACCAGTGTCAGACTTGCTTCATC
LOC_Os10g35730
Os.15944.2.S1_x_at--784--551Chr10:18775920..18775944 (25 bp)
ATCCTTGCGGGAGAAGTCCACTAGG
LOC_Os10g35730
Os.15944.2.S1_x_at--830--5851Chr10:18775973..18775997 (25 bp)
GACCAATTCCTTTTCTTTGCTTATT
LOC_Os10g35730
Os.15944.2.S1_x_at--1034--9111Chr10:18775999..18776023 (25 bp)
TGCTGTCCTTTTTCTTGTTTCTGGG
LOC_Os10g35730
Os.15944.2.S1_x_at--1146--2971Chr10:18776026..18776050 (25 bp)
AATGAAGTTCAAACCCACTAGCCCG
LOC_Os10g35730
Os.15944.2.S1_x_at--1160--3312Chr10:18776041..18776065 (25 bp)
CACTAGCCCGTGGATTTGAGTATTT
LOC_Os10g35730
Target Sequence 
GAGGATGCCTTTTGCCAATACTTGTTATAAGTTGGCTGGTGGATATTTCAAGGTTGGTCAGGTGTCGAAGGCAGCAGATC
TCACAAAGAAGGCACTTGCTTCTGCGAGTAATGAATGGATACCTGACCTGACGAATGTGCTGATGAGCCTGAACTATTTC
GCGGAGCAAAAGAATGTCGAAGCAGCTGAGGAGATGATGAGCTTATTACAGAGATTGGTTACTCCAACAAGGGACATTTA
CCATGGGTTACTGAAGACATATGTCAATGCAGGAAAACCAGTGTCAGACTTGCTTCATCGTATGAAAAAAGATGGTATGG
AGGCTGATGAGGAGACAGAGAAAATCCTTGCGGGAGAAGTCCACTAGGTACACAGGATTGAATAAAACATATCACTGACC
AATTCCTTTTCTTTGCTTATTTTGCTGTCCTTTTTCTTGTTTCTGGGGCAATGAAGTTCAAACCCACTAGCCCGTGGATT
TGAGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15944.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis