Browse Element(s) Details


Os.16128.2.S1_at

Description gb:CB653141
DB_XREF= gi:29656866
DB_XREF=OSJNEc03O03.r
CLONE=OSJNEc03O03
TID=Os.16128.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3567011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16128.2.S1_at--767--9231Chr10:18751451..18751475 (25 bp)
TCCATTCTGCCGTGACAACTTGAAG
LOC_Os10g35670
Os.16128.2.S1_at--1027--1951Chr10:18751479..18751503 (25 bp)
ACTGACCCTGGTGACTTATGGATCT
LOC_Os10g35670
Os.16128.2.S1_at--257--1751Chr10:18751552..18751576 (25 bp)
ACCTCAGAAGGCTGTTCATGTACAT
LOC_Os10g35670
Os.16128.2.S1_at--580--2411Chr10:18751577..18751601 (25 bp)
AAACAAGCTGCCTCTGATTGTTCCG
LOC_Os10g35670
Os.16128.2.S1_at--1058--6591Chr10:18751592..18751616 (25 bp)
GATTGTTCCGGATGTCATCTTCAGT
LOC_Os10g35670
Os.16128.2.S1_at--392--9831Chr10:18751633..18751657 (25 bp)
TAAAATGACTCGCAACGCTGCTTCG
LOC_Os10g35670
Os.16128.2.S1_at--907--9571Chr10:18751735..18751759 (25 bp)
TCTTGGAAATGCCTGAACCGTTGTG
LOC_Os10g35670
Os.16128.2.S1_at--1160--8571Chr10:18751800..18751824 (25 bp)
TGGTTACATGCGTCCTATCTTCAAG
LOC_Os10g35670
Os.16128.2.S1_at--896--10031Chr10:18751868..18751892 (25 bp)
TAGAGAACTTGTGCATGCCCCAAAT
LOC_Os10g35670
Os.16128.2.S1_at--878--6771Chr10:18751909..18751933 (25 bp)
GTTACTGTTATTCTGAGCTCTGTTG
LOC_Os10g35670
Os.16128.2.S1_at--327--1591Chr10:18751924..18751948 (25 bp)
AGCTCTGTTGTAGCTTGCTCTTGCT
LOC_Os10g35670
Target Sequence 
TCCATTCTGCCGTGACAACTTGAAGAAGACTGACCCTGGTGACTTATGGATCTATGTTGAGGACCAAGATGTGGTTGACT
TGGAGACAGTGTCAAGAGAGAACCTCAGAAGGCTGTTCATGTACATAAACAAGCTGCCTCTGATTGTTCCGGATGTCATC
TTCAGTATTTATGATTCCCACATAAAATGACTCGCAACGCTGCTTCGTCGACNGCCTTCAGCCAATGCTCTGTTNTGATT
AAGCTATGCCCCCAAGTTCTCCATTTCCATGCTTAGACTCAAGCTCTTGGAAATGCCTGAACCGTTGTGGAGACACAAAC
CTCCTGGTNGTGTTGTAGAACTTATTTAGTGGTTACATGCGTCCTATCTTCAAGCATATCAAAGCCAGCTTGTATATATC
TGACATGGCTCTGTCAATAGAGAACTTGTGCATGCCCCAAATGGAGGCAGTGCTGTTTGTTACTGTTATTCTGAGCTCTG
TTGTAGCTTGCTCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16128.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis