Browse Element(s) Details


OsAffx.30680.1.S1_x_at

Description gb:NM_197215.1
DB_XREF= gi:37535789
TID=OsAffx.30680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0073N24.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3583010/11hypothetical protein
LOC_Os11g227501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30680.1.S1_x_at--852--272Chr11:12602847..12602875 (23 bp)
ATATGGCCGGCGTTAGCTATGGCCG
LOC_Os11g22750
OsAffx.30680.1.S1_x_at--37--4111Chr10:18826883..18826907 (25 bp)
CGAAAGGCGGGTACATGTCAAGGTT
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--976--751Chr10:18826869..18826893 (25 bp)
ATGTCAAGGTTGCAGGTTCCTCCTT
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--403--10731Chr10:18826860..18826884 (25 bp)
TTGCAGGTTCCTCCTTCAGATTCAG
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--582--1251Chr10:18826843..18826867 (25 bp)
AGATTCAGGACATCACGTTGGCGAT
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--784--8131Chr10:18826840..18826860 (21 bp)
GGACATCACGTTGGCGATGAGCAGT
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--299--5931Chr10:18826327..18826349 (23 bp)
GAGCAGTACAATCCAAGTTATCAGA
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--827--7951Chr10:18826289..18826313 (25 bp)
GGATCCCAAAGTCTTCATGGCAGCT
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--790--851Chr10:18826273..18826297 (25 bp)
ATGGCAGCTCAGACTTTAGAACTTC
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--170--5471Chr10:18826255..18826279 (25 bp)
GAACTTCAAAGCAGGACTACTCGTA
LOC_Os10g35830
OsAffx.30680.1.S1_x_at--123--5711Chr10:18826241..18826265 (25 bp)
GACTACTCGTATATCATCCAAATGC
LOC_Os10g35830
Target Sequence 
ATATGGCCGGCGTTAGCTATGGCCGGAGGCTCATCCCGGACCTCGATGCCATGGCGGTCGTCGGCGGCTCGCCGCCGGCG
AAAGGCGGGTACATGTCAAGGTTGCAGGTTCCTCCTTCAGATTCAGGACATCACGTTGGCGATGAGCAGTACAATCCAAG
TTATCAGAACTTCAAAATTGTGGATCCCAAAGTCTTCATGGCAGCTCAGACTTTAGAACTTCAAAGCAGGACTACTCGTA
TATCATCCAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30680.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis