Browse Element(s) Details


Os.24608.1.S1_at

Description gb:AK104769.1
DB_XREF= gi:32989978
TID=Os.24608.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A04, full insert sequence.
FL= gb:AK104271.1 gb:AK104769.1 gb:AK067334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3111011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24608.1.S1_at--631--6051Chr04:18413460..18413483 (24 bp)
GAGATTTCACTCCATCAAGAGGCAC
LOC_Os04g31110
Os.24608.1.S1_at--859--391Chr04:18413495..18413519 (25 bp)
ATCAGAGACAGTCACCATTCGCGGG
LOC_Os04g31110
Os.24608.1.S1_at--530--10151Chr04:18413525..18413549 (25 bp)
TATCGGTGGACAGATCGGAGCCTTC
LOC_Os04g31110
Os.24608.1.S1_at--1101--6391Chr04:18413537..18413561 (25 bp)
GATCGGAGCCTTCTCTGATCGAGAA
LOC_Os04g31110
Os.24608.1.S1_at--62--1451Chr04:18413561..18413585 (25 bp)
AGAAGCAGAGGCTCCTCGAACTTCT
LOC_Os04g31110
Os.24608.1.S1_at--498--2571Chr04:18413644..18413668 (25 bp)
AACGGCGCTGTCCATGCTGAAGAGT
LOC_Os04g31110
Os.24608.1.S1_at--693--8371Chr04:18413697..18413721 (25 bp)
GGCGAACAGGGCATCCAAGTCCAGG
LOC_Os04g31110
Os.24608.1.S1_at--427--5211Chr04:18413826..18413850 (25 bp)
GAATTTTGTTTTTCTACTTCCTGTG
LOC_Os04g31110
Os.24608.1.S1_at--577--5511Chr04:18413850..18413874 (25 bp)
GAAAATTGCTTTTTACGACAGCGAG
LOC_Os04g31110
Os.24608.1.S1_at--867--9871Chr04:18413886..18413910 (25 bp)
TACTTTTTACCCCTGAAATGCTTCA
LOC_Os04g31110
Os.24608.1.S1_at--833--8991Chr04:18413935..18413959 (25 bp)
TGAAGTGGCCGCTTATTGTGCTGTA
LOC_Os04g31110
Target Sequence 
GAGATTTCACTCCATCAAGAGGCACCACCCCAGATCATCAGAGACAGTCACCATTCGCGGGGCGAATATCGGTGGACAGA
TCGGAGCCTTCTCTGATCGAGAAGAAGCAGAGGCTCCTCGAACTTCTCCAGGAGAAGCAGCAGTACGACGATGACAGCGT
CGCTGATGTCGGTAGCGAGATCGAGAACGGCGCTGTCCATGCTGAAGAGTATCTGAAATCATCGAGGAAAGGCGCAAAGG
CGAACAGGGCATCCAAGTCCAGGGGAGGCTGCTTCCCAAGCTCTTTTTGGAAGATCAAATTCAGGAGCTGCAGGAAGAAG
AGAAAAGAGCAGAATGATTAGCTGAATTTTAGCAGCATTGTGATGTTGAATTTTGTTTTTCTACTTCCTGTGAAAATTGC
TTTTTACGACAGCGAGGGGAATATATATACTTTTTACCCCTGAAATGCTTCAGCTGGAAACGACAAAAAGAAGTTTTGAA
GTGGCCGCTTATTGTGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis