Browse Element(s) Details


Os.17370.1.S1_x_at

Description gb:AK120419.1
DB_XREF= gi:37990042
TID=Os.17370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094A11, full insert sequence.
FL= gb:AK120419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1555011/11expressed protein
LOC_Os04g310901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15510OsAffx.26038.1.S1_at11/114+8413130..8415433hypothetical protein
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17370.1.S1_x_at--40--2911Chr04:8440478..8440502 (25 bp)
AAGGTTTGATCTGCTGGTCTACTGA
LOC_Os04g15550
Os.17370.1.S1_x_at--372--6971Chr04:8440711..8440735 (25 bp)
GTAGCTGTCGATGTCAGAGCACCAA
LOC_Os04g15550
Os.17370.1.S1_x_at--1159--5071Chr04:8440729..8440753 (25 bp)
GCACCAAGTGCTTATGGATCTTACC
LOC_Os04g15550
Os.17370.1.S1_x_at--1131--4472Chr04:8440763..8440787 (25 bp)
GCCGGAGGTTGTTCATCGGTCACAA
LOC_Os04g15550
Os.17370.1.S1_x_at--999--491Chr04:8440777..8440801 (25 bp)
ATCGGTCACAACAATCCTCATCATG
LOC_Os04g15550
Os.17370.1.S1_x_at--191--1672Chr04:8440821..8440845 (25 bp)
AGCCCTTGTTCCCATCAATTAGTTA
LOC_Os04g15550
Os.17370.1.S1_x_at--977--9511Chr04:8441020..8441044 (25 bp)
TCTACAATACATGCTACTCCTACTT
LOC_Os04g15550
Os.17370.1.S1_x_at--495--1691Chr04:8441050..8441074 (25 bp)
AGCCACATTGTGTCGTCGGAATATA
LOC_Os04g15550
Os.17370.1.S1_x_at--574--7191Chr04:8441064..8441088 (25 bp)
GTCGGAATATACATGCAGCCAGGTT
LOC_Os04g15550
Os.17370.1.S1_x_at--111--4872Chr04:8441147..8441171 (25 bp)
GCATCGTTTTGAGCCTCTTTACAGG
LOC_Os04g15550
Os.17370.1.S1_x_at--537--5911Chr04:8441227..8441251 (25 bp)
GAGCTTTGTCTATGTCACCTTAGTT
LOC_Os04g15550
Target Sequence 
AAGGTTTGATCTGCTGGTCTACTGAAGAAAACATTATTTAGTGTTGCCTACAAATTAATAGTTTTCAGTGAGGTAGCTGT
CGATGTCAGAGCACCAAGTGCTTATGGATCTTACCTAAATGTTTGCCGGAGGTTGTTCATCGGTCACAACAATCCTCATC
ATGTTTTCATGTCAACTATTTTAGCCCTTGTTCCCATCAATTAGTTAACTTTTGGAGCTAAAAGCTTCCGATAAAAAAAC
TGCAGGGGTATGACTAGAGATCACATAAATATGACTGATCAATGCTCTACAATACATGCTACTCCTACTTCATCTAGCCA
CATTGTGTCGTCGGAATATACATGCAGCCAGGTTAAATAGATTTATTTGGAAAGCTTATTGTCTTTCAGCAACAAATATA
CATGTTTGTTTGGCATCGTTTTGAGCCTCTTTACAGGTACTGATTTACCTTTAATTCTATAAAAAATGTTATATTCATTA
TAGAATTATCTTGAGCTTTGTCTATGTCACCTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17370.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis