Browse Element(s) Details


Os.23398.1.S1_at

Description gb:AK119282.1
DB_XREF= gi:37988905
TID=Os.23398.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C07, full insert sequence.
FL= gb:AK119282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1558011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15620NANA4+8472635..8475578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15630OsAffx.13826.1.S1_at11/114+8477093..8479798Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23398.1.S1_at--1157--3091Chr04:8453417..8453441 (25 bp)
AATACCACCAGGGTTGTCGGCACAT
LOC_Os04g15580
Os.23398.1.S1_at--951--851Chr04:8453266..8453290 (25 bp)
ATGGCTATTTTTCCGTCAAGTCTGA
LOC_Os04g15580
Os.23398.1.S1_at--1056--5691Chr04:8453168..8453192 (25 bp)
GACTGTTCAAACCTTATAGCCTATG
LOC_Os04g15580
Os.23398.1.S1_at--939--191Chr04:8453026..8453050 (25 bp)
ATTTCGTAGACTCATCCATTGTGGA
LOC_Os04g15580
Os.23398.1.S1_at--193--3611Chr04:8453010..8453034 (25 bp)
CATTGTGGAGAGCTGTCCACTTCAT
LOC_Os04g15580
Os.23398.1.S1_at--1086--6251Chr04:8452975..8452999 (25 bp)
GATGTATACATTTAGGACTCCTTTG
LOC_Os04g15580
Os.23398.1.S1_at--443--6451Chr04:8452943..8452967 (25 bp)
GATCAACCAAGTGCTAGGCCACTGA
LOC_Os04g15580
Os.23398.1.S1_at--271--5951Chr04:8452895..8452919 (25 bp)
GAGAACGAAACTGCCGTGCTTCCTG
LOC_Os04g15580
Os.23398.1.S1_at--516--1271Chr04:8452802..8452826 (25 bp)
AGATCAAGATCTCTGAACCACATGA
LOC_Os04g15580
Os.23398.1.S1_at--426--6771Chr04:8452756..8452780 (25 bp)
GTTAAATGGTTAATTCCGCTGTACA
LOC_Os04g15580
Os.23398.1.S1_at--167--4211Chr04:8452741..8452765 (25 bp)
CCGCTGTACAGATCCCAATTTTTTA
LOC_Os04g15580
Target Sequence 
AATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGA
CACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTT
CAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGC
TGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGAT
GTCATCCATTGTGTTCATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGG
AGTACGGGACAGACGAAGACACGAGAGATAGCATGAGATCAAGATCTCTGAACCACATGAGTAAAACAGCAGAAGATGGG
CGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis