Browse Element(s) Details


OsAffx.13826.1.S1_at

Description tigr:9632.m01392
TID=OsAffx.13826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1563011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15620NANA4+8472635..8475578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15630OsAffx.13826.1.S1_at11/114+8477093..8479798Leucine Rich Repeat family protein
LOC_Os04g15640OsAffx.13827.1.S1_at10/114+8484101..8485321hypothetical protein
LOC_Os04g15650Os.49817.1.S1_at11/114+8487803..8490905Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.13825.1.S1_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.24234.1.S1_x_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15670NANA4+8498474..8499100expressed protein
LOC_Os04g15680NANA4+8499387..8499710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13826.1.S1_at--299--1011Chr04:8479114..8479138 (25 bp)
AGGTCAGAGAATATGCATAGCAACT
LOC_Os04g15630
OsAffx.13826.1.S1_at--338--7731Chr04:8479141..8479165 (25 bp)
GGTGGCTTCTGCTCTGGATTATATC
LOC_Os04g15630
OsAffx.13826.1.S1_at--762--8291Chr04:8479144..8479168 (25 bp)
GGCTTCTGCTCTGGATTATATCCAC
LOC_Os04g15630
OsAffx.13826.1.S1_at--203--9471Chr04:8479153..8479177 (25 bp)
TCTGGATTATATCCACAACCATCTA
LOC_Os04g15630
OsAffx.13826.1.S1_at--403--5951Chr04:8479210..8479234 (25 bp)
GAGCAATATCCTCTTAGACGATGAC
LOC_Os04g15630
OsAffx.13826.1.S1_at--1047--9551Chr04:8479221..8479245 (25 bp)
TCTTAGACGATGACATGACCGCGCG
LOC_Os04g15630
OsAffx.13826.1.S1_at--925--1871Chr04:8479227..8479251 (25 bp)
ACGATGACATGACCGCGCGTCTAGG
LOC_Os04g15630
OsAffx.13826.1.S1_at--1047--671Chr04:8479235..8479259 (25 bp)
ATGACCGCGCGTCTAGGTGATTTTG
LOC_Os04g15630
OsAffx.13826.1.S1_at--2--4031Chr04:8479244..8479268 (25 bp)
CGTCTAGGTGATTTTGGGTCAGCAA
LOC_Os04g15630
OsAffx.13826.1.S1_at--219--9471Chr04:8479285..8479309 (25 bp)
TCTGGTCAGTCTGGAAAGCTTAGCT
LOC_Os04g15630
OsAffx.13826.1.S1_at--663--3451Chr04:8479291..8479315 (25 bp)
CAGTCTGGAAAGCTTAGCTGATATA
LOC_Os04g15630
Target Sequence 
AGGTCAGAGAATATGCATAGCAACTGAGGTGGCTTCTGCTCTGGATTATATCCACAACCATCTAACACCCCCTTTGGTCC
ATTGTGATGTGAAGCCGAGCAATATCCTCTTAGACGATGACATGACCGCGCGTCTAGGTGATTTTGGGTCAGCAAAGTTT
CTATTTCCAGATCTGGTCAGTCTGGAAAGCTTAGCTGATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis