Browse Element(s) Details


OsAffx.13827.1.S1_at

Description tigr:9632.m01393
TID=OsAffx.13827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1564010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15620NANA4+8472635..8475578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15630OsAffx.13826.1.S1_at11/114+8477093..8479798Leucine Rich Repeat family protein
LOC_Os04g15640OsAffx.13827.1.S1_at10/114+8484101..8485321hypothetical protein
LOC_Os04g15650Os.49817.1.S1_at11/114+8487803..8490905Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.13825.1.S1_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.24234.1.S1_x_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15670NANA4+8498474..8499100expressed protein
LOC_Os04g15680NANA4+8499387..8499710hypothetical protein
LOC_Os04g15690Os.8531.1.S1_at11/114+8508353..8513023DSBA-like thioredoxin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13827.1.S1_at--83--3519Chr12:22707267..22707625 (25 bp)
ATAAAATTACTCACAGCCAGCCACA
NONE
OsAffx.13827.1.S1_at--1155--2153Chr04:8484423..8484446 (24 bp)
ACAGCCAGCCACATGAAGCACGATG
LOC_Os04g15640
OsAffx.13827.1.S1_at--1103--5093Chr04:8484439..8484463 (25 bp)
GCACGATGTGTAAATGTAGGACCTG
LOC_Os04g15640
OsAffx.13827.1.S1_at--622--6931Chr04:8484454..8484478 (25 bp)
GTAGGACCTGTGCAATCCATTAATT
LOC_Os04g15640
OsAffx.13827.1.S1_at--98--3551NONE
CATTAATTCAGATAAGGTTCACGGA
NONE
OsAffx.13827.1.S1_at--807--9711Chr04:8485162..8485186 (25 bp)
TAAGGTTCACGGAAGAGGTATGGCT
LOC_Os04g15640
OsAffx.13827.1.S1_at--357--10231Chr04:8485206..8485230 (25 bp)
TTTGGTTACCAACTGGGTGGCTCAC
LOC_Os04g15640
OsAffx.13827.1.S1_at--659--3251Chr04:8485215..8485239 (25 bp)
CAACTGGGTGGCTCACTAACGAGTA
LOC_Os04g15640
OsAffx.13827.1.S1_at--873--3311Chr04:8485228..8485252 (25 bp)
CACTAACGAGTATGGCGGTGGCCTC
LOC_Os04g15640
OsAffx.13827.1.S1_at--477--871Chr04:8485239..8485263 (25 bp)
ATGGCGGTGGCCTCGGCTCATCAAT
LOC_Os04g15640
OsAffx.13827.1.S1_at--615--9451Chr04:8485251..8485275 (25 bp)
TCGGCTCATCAATGGCCGAGGTGGA
LOC_Os04g15640
Target Sequence 
ATAAAATTACTCACAGCCAGCCACATGAAGCACGATGTGTAAATGTAGGACCTGTGCAATCCATTAATTCAGATAAGGTT
CACGGAAGAGGTATGGCTGTTGGTGGAGGTGAAGAGTTTTGGTTACCAACTGGGTGGCTCACTAACGAGTATGGCGGTGG
CCTCGGCTCATCAATGGCCGAGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis