Browse Element(s) Details


OsAffx.13824.1.S1_at

Description tigr:9632.m01388
TID=OsAffx.13824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1559011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15620NANA4+8472635..8475578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15630OsAffx.13826.1.S1_at11/114+8477093..8479798Leucine Rich Repeat family protein
LOC_Os04g15640OsAffx.13827.1.S1_at10/114+8484101..8485321hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13824.1.S1_at--314--1771Chr04:8462172..8462196 (25 bp)
ACCTGGACTTATCAGCGGTGGTCAA
LOC_Os04g15590
OsAffx.13824.1.S1_at--673--9771Chr04:8462143..8462167 (25 bp)
TAAGTGACACTTGCCGCTACTTGCA
LOC_Os04g15590
OsAffx.13824.1.S1_at--194--6491Chr04:8462058..8462082 (25 bp)
GATACCGCAACAACTCGACAGGGAT
LOC_Os04g15590
OsAffx.13824.1.S1_at--569--6251Chr04:8462036..8462060 (25 bp)
GATGGTGTCGGTGAGCCTGTTCTAC
LOC_Os04g15590
OsAffx.13824.1.S1_at--955--1671Chr04:8462023..8462047 (25 bp)
AGCCTGTTCTACTCGAGCGATGCAA
LOC_Os04g15590
OsAffx.13824.1.S1_at--999--1071Chr04:8461624..8461648 (25 bp)
AGGGCAACTACAGAGCTCGTGCTCG
LOC_Os04g15590
OsAffx.13824.1.S1_at--562--4291Chr04:8461575..8461599 (25 bp)
CCTCGGCCTCCGAAGCAAGGAGATT
LOC_Os04g15590
OsAffx.13824.1.S1_at--856--1531Chr04:8461503..8461527 (25 bp)
AGCATGTAAGATGCCGCCGGTGCGA
LOC_Os04g15590
OsAffx.13824.1.S1_at--419--5231Chr04:8461465..8461489 (25 bp)
GAATACGGCGGCACTGTGACGTACT
LOC_Os04g15590
OsAffx.13824.1.S1_at--133--1971Chr04:8461453..8461477 (25 bp)
ACTGTGACGTACTTGCTGTGCTGAG
LOC_Os04g15590
OsAffx.13824.1.S1_at--652--4771Chr04:8461409..8461433 (25 bp)
GCTGCCAGCGCGTGCTTCAATGAGG
LOC_Os04g15590
Target Sequence 
ACCTGGACTTATCAGCGGTGGTCAAATCCTAAGTGACACTTGCCGCTACTTGCAAGGAGCTGCCCATGGGGAATGGGAGG
CGCGACCTCATCGGGTTCGACCACCCCACCTCATGATACCGCAACAACTCGACAGGGATGGTGTCGGTGAGCCTGTTCTA
CTCGAGCGATGCAAGCAGGGCAACTACAGAGCTCGTGCTCGAGGAGGCGTCGGCGCACATCTCCTCCTCGGCCTCCGAAG
CAAGGAGATTGAGCTCGAGCTCAAGGAGGCAGCCTCCGACCTCCAACACAAGGAGGCAGCATGTAAGATGCCGCCGGTGC
GAGTGCATGCAAAGGGAATACGGCGGCACTGTGACGTACTTGCTGTGCTGAGGAGGAGGAAGCTCGGATGGGCTGCCAGC
GCGTGCTTCAATGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis