Browse Element(s) Details


OsAffx.28833.1.S1_x_at

Description tigr:9635.m03995
TID=OsAffx.28833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4002011/11scarecrow transcription factor family protein, putative, expressed
LOC_Os04g156001/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40030Os.6835.1.S1_at11/117+24018685..24023410transducin family protein, putative, expressed
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0008356biological_processasymmetric cell division
GO:0009598biological_processdetection of pathogenic bacteria
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28833.1.S1_x_at--1073--1711Chr07:24013892..24013916 (25 bp)
ACCAGCTCCGGGTGCAGCAGCTCGT
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--705--891Chr07:24013931..24013955 (25 bp)
AGGCGCTGGTCGTGAACTGCCACAT
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--832--4791Chr07:24013988..24014012 (25 bp)
GCTCGGTCAGCCTGACGACGGCGCA
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--805--8611Chr07:24014081..24014105 (25 bp)
TGGTGGACGAGGACGCCGACTTCAC
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--1040--7572Chr07:24014122..24014146 (25 bp)
GGGCGGCTGCGTGCGGCGTTCAACT
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--695--4631Chr07:24014137..24014161 (25 bp)
GCGTTCAACTTCCTGTGGATCCCGT
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--880--2491Chr07:24014143..24014167 (25 bp)
AACTTCCTGTGGATCCCGTACGACG
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--656--5311Chr07:24014232..24014256 (25 bp)
GAAGGTGGAGAACGTGCTGGCGCAG
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--240--9011Chr07:24014366..24014390 (25 bp)
TGAAGGCGATGCTGAACGACCACGC
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--589--4051Chr07:24014372..24014396 (25 bp)
CGATGCTGAACGACCACGCGGCCGG
LOC_Os07g40020
OsAffx.28833.1.S1_x_at--67--1871Chr07:24014417..24014441 (25 bp)
ACGACGACCTCGTGCTCACGTGGAA
LOC_Os07g40020
Target Sequence 
ACCAGCTCCGGGTGCAGCAGCTCGTCTCCGACGGCGGCGAGGCGCTGGTCGTGAACTGCCACATGCTCCTCCACACCGTC
CCGGACGAGACGGCCGGCTCGGTCAGCCTGACGACGGCGCAGCCGCCGGTGTCCCTCCGTACCATGCTCCTCAAATCTCT
CCGGGCGCTCGACCCGACGCTGGTGGTGGTGGTGGACGAGGACGCCGACTTCACCGCGGGCGACGTGGTGGGGCGGCTGC
GTGCGGCGTTCAACTTCCTGTGGATCCCGTACGACGCCGTGGACACGTTCCTCCCCAAGGGGAGCGAGCAGCGGCGGTGG
TATGAGGCGGAGGTGGGGTGGAAGGTGGAGAACGTGCTGGCGCAGGAAGGGGTGGAGAGGGTGGAGCGGCAGGAGGACAG
GACGAGGTGGGGCCAGCGGATGCGCGCCGCCGGGTTCCGCGCGGCGGCGTTCGGCGAGGAGGCCGCCGGCGAGGTGAAGG
CGATGCTGAACGACCACGCGGCCGGGTGGGGGATGAAGCGGGAGGACGACGACCTCGTGCTCACGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28833.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis