Browse Element(s) Details


Os.23164.1.S1_a_at

Description gb:AK103183.1
DB_XREF= gi:32988392
TID=Os.23164.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121K01, full insert sequence.
FL= gb:AK103183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3998011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23164.1.S1_a_at--966--5551Chr07:23987719..23987739 (21 bp)
GAAAGCAGCTTCTGAGCATTGACAT
LOC_Os07g39980
Os.23164.1.S1_a_at--183--4951Chr07:23987730..23987754 (25 bp)
GCATTGACATCGATCTATGGCTCTG
LOC_Os07g39980
Os.23164.1.S1_a_at--933--10091Chr07:23987745..23987769 (25 bp)
TATGGCTCTGGTCATGTGGCGTTCA
LOC_Os07g39980
Os.23164.1.S1_a_at--688--1431Chr07:23987769..23987793 (25 bp)
AGAACATGGCGTTGTCACATCACCG
LOC_Os07g39980
Os.23164.1.S1_a_at--270--4231Chr07:23987791..23987815 (25 bp)
CCGCACCCTCTCAATATATTACTGA
LOC_Os07g39980
Os.23164.1.S1_a_at--420--9291Chr07:23987844..23987868 (25 bp)
TCCGTCCAGTGTATTGTTCCAGCAA
LOC_Os07g39980
Os.23164.1.S1_a_at--381--1571Chr07:23987893..23987917 (25 bp)
AGCTACTGAATTTTTGTCCCTCTTG
LOC_Os07g39980
Os.23164.1.S1_a_at--973--7231Chr07:23987908..23987932 (25 bp)
GTCCCTCTTGGGAGTGCACAAAAGT
LOC_Os07g39980
Os.23164.1.S1_a_at--721--9811Chr07:23987944..23987968 (25 bp)
TAGACTTGTTGGTTCGTCCAGATTC
LOC_Os07g39980
Os.23164.1.S1_a_at--783--4831Chr07:23987992..23988016 (25 bp)
GCTCAAAGTTTCCAGTTGACCTGTA
LOC_Os07g39980
Os.23164.1.S1_a_at--804--7971Chr07:23988039..23988063 (25 bp)
GGATGCACTTGGACTAGAATTCAGA
LOC_Os07g39980
Target Sequence 
GAAAGCAGCTTCTGAGCATTGACATCGATCTATGGCTCTGGTCATGTGGCGTTCAGAACATGGCGTTGTCACATCACCGC
ACCCTCTCAATATATTACTGAGAGCCAGCAGCTGCTGCTGGGCGCCCCCTCCGTCCAGTGTATTGTTCCAGCAACTCTCT
ACNACTAGTAGCTGCTATAGCTACTGAATTTTTGTCCCTCTTGGGAGTGCACAAAAGTGCACGCTATTGTAGACTTGTTG
GTTCGTCCAGATTCTGAGACAAGAAATCTTTAGAACAGCTCAAAGTTTCCAGTTGACCTGTAGGGTGTAGTAGGGTGTGC
AATTGGATGCACTTGGACTAGAATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23164.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis