Browse Element(s) Details


Os.50628.1.S1_at

Description gb:AY395294.1
DB_XREF= gi:37623880
GEN=ZFP39
TID=Os.50628.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50628 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
PROD=C2H2-type zinc finger transcription factor
FL= gb:AY395294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3997011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50628.1.S1_at--283--7051Chr07:23978974..23978998 (25 bp)
GTAACATCTCTGGTAGTGTCGCCAT
LOC_Os07g39970
Os.50628.1.S1_at--904--7231Chr07:23978991..23979015 (25 bp)
GTCGCCATCGGCAGTGATTCTGAGG
LOC_Os07g39970
Os.50628.1.S1_at--609--8011Chr07:23979014..23979038 (25 bp)
GGAGGAGTACTTGGCGACTTCTCTC
LOC_Os07g39970
Os.50628.1.S1_at--616--5691Chr07:23979029..23979053 (25 bp)
GACTTCTCTCTTGATGCTCGCACAT
LOC_Os07g39970
Os.50628.1.S1_at--919--4391Chr07:23979139..23979163 (25 bp)
GCCAACGGGCTTATGAGTGCTCGGT
LOC_Os07g39970
Os.50628.1.S1_at--677--4491Chr07:23979243..23979267 (25 bp)
GCCGGTGATGAGTTGTCCTCCGATA
LOC_Os07g39970
Os.50628.1.S1_at--982--2851Chr07:23979291..23979315 (25 bp)
AAGTGCTCTATCTGTCGCCTTGAGT
LOC_Os07g39970
Os.50628.1.S1_at--492--991Chr07:23979335..23979359 (25 bp)
AGGAGGACACATGCGGGTGCACTAT
LOC_Os07g39970
Os.50628.1.S1_at--615--2751Chr07:23979442..23979466 (25 bp)
AAGACTTTGACCTGAACGTGCCTGT
LOC_Os07g39970
Os.50628.1.S1_at--890--5991Chr07:23979495..23979519 (25 bp)
GAGAGCTCACATTCAGAGGCCAAAG
LOC_Os07g39970
Os.50628.1.S1_at--26--2371Chr07:23979516..23979540 (25 bp)
AAAGCGCGGATGATGACACTCCCCT
LOC_Os07g39970
Target Sequence 
GTAACATCTCTGGTAGTGTCGCCATCGGCAGTGATTCTGAGGAGGAGTACTTGGCGACTTCTCTCTTGATGCTCGCACAT
GGCATTCGGGACGAGACCAAGGACATCCGAGGGATGGGAGACGTAAAAGGTGTGGGTGTTGACACTTTGGAGCTGGTGAA
ACCAAGCCAACGGGCTTATGAGTGCTCGGTGTGTGGCAAGGTGTACTGGTGTTACCAGGCGTTGGGTGGGCACATGACGT
GCCACCGCAACCTATTTGCACAAGTGGTGGCCGGTGATGAGTTGTCCTCCGATAGGACCATGGTGGTTAAGGGGCACAAG
TGCTCTATCTGTCGCCTTGAGTTCCCATCTGGGCAGGCGCTAGGAGGACACATGCGGGTGCACTATGTGGGTGGTGTTGA
AGGAGGCTCTGTCAAGGAGAAGAACGTTGTGAAGACCAAGGTTACAGGAGCACTGAAGCTAGTGTTGAAAGACTTTGACC
TGAACGTGCCTGTTGTGGCAACGATGGTGGGAGACGAGGCTGAGAGCTCACATTCAGAGGCCAAAGCGCGGATGATGACA
CTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis