Browse Element(s) Details


OsAffx.16646.1.S1_at

Description tigr:9635.m03986
TID=OsAffx.16646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3993011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16646.1.S1_at--719--5391Chr07:23953496..23953520 (25 bp)
GAAGCAGTCTGCCATCTTATGGATC
LOC_Os07g39930
OsAffx.16646.1.S1_at--31--5431Chr07:23953524..23953548 (25 bp)
GAAGCCATTGAAGCAGACCTCTCAC
LOC_Os07g39930
OsAffx.16646.1.S1_at--1129--9511Chr07:23953543..23953567 (25 bp)
TCTCACCTTTTTCTAGCCATACAAG
LOC_Os07g39930
OsAffx.16646.1.S1_at--453--6091Chr07:23953599..23953623 (25 bp)
GAGTCAAAGCCTATGACCCCATTGT
LOC_Os07g39930
OsAffx.16646.1.S1_at--1098--4311Chr07:23953617..23953641 (25 bp)
CCATTGTTCTGTTGTTCCAAGCCAA
LOC_Os07g39930
OsAffx.16646.1.S1_at--648--2351Chr07:23953671..23953695 (25 bp)
AAAGCATCTGATGGTTCCTCTCAAG
LOC_Os07g39930
OsAffx.16646.1.S1_at--1102--3491Chr07:23953715..23953739 (25 bp)
CATGGACCTGGCTGTAGCACTGAGA
LOC_Os07g39930
OsAffx.16646.1.S1_at--64--7351Chr07:23953745..23953769 (25 bp)
GTGCAACTGTTGGTTCCTCAAGTAC
LOC_Os07g39930
OsAffx.16646.1.S1_at--1031--6891Chr07:23953808..23953832 (25 bp)
GTATGCACCATGTGATTCCCAAGTT
LOC_Os07g39930
OsAffx.16646.1.S1_at--303--2631Chr07:23953875..23953899 (25 bp)
AACCGTGTCGCGCTACATGAGAGGA
LOC_Os07g39930
OsAffx.16646.1.S1_at--148--8911Chr07:23953892..23953916 (25 bp)
TGAGAGGATGCTTTCGGTTGACCGA
LOC_Os07g39930
Target Sequence 
GAAGCAGTCTGCCATCTTATGGATCAGAGAAGCCATTGAAGCAGACCTCTCACCTTTTTCTAGCCATACAAGACCCACTG
AATCACCAAAGCTATCACTGGCAGAGTCAAAGCCTATGACCCCATTGTTCTGTTGTTCCAAGCCAAAGTGCAACTGCAGC
AAAAGGTCCTCAAGGAAAGCATCTGATGGTTCCTCTCAAGGAAGTAACATGAGTGCTGCCATGGACCTGGCTGTAGCACT
GAGATCAGAGTGCAACTGTTGGTTCCTCAAGTACATCGACAAGTTCTTGGACGATATCGAAAGCGAGACCATGTATGCAC
CATGTGATTCCCAAGTTGCAGGCCTTCTGCAGCAGCTTAAAAGGGTGGATGACTGGCTCAACCGTGTCGCGCTACATGAG
AGGATGCTTTCGGTTGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis