Browse Element(s) Details


Os.50281.1.S1_at

Description gb:AK120511.1
DB_XREF= gi:37990134
TID=Os.50281.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123L23, full insert sequence.
FL= gb:AK120511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3992011/11formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g014401/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006809biological_processnitric oxide biosynthesis
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0004517molecular_functionnitric-oxide synthase activity
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50281.1.S1_at--642--2611Chr07:23948165..23948189 (25 bp)
AACCGCAGAGGAGAACGCGTTGCGC
LOC_Os07g39920
Os.50281.1.S1_at--997--971Chr07:23948173..23948197 (25 bp)
AGGAGAACGCGTTGCGCCTCGTGAA
LOC_Os07g39920
Os.50281.1.S1_at--723--1431Chr07:23948176..23948200 (25 bp)
AGAACGCGTTGCGCCTCGTGAAGGA
LOC_Os07g39920
Os.50281.1.S1_at--420--2911Chr07:23948196..23948220 (25 bp)
AAGGAGACGACGGAGTACTTCCATG
LOC_Os07g39920
Os.50281.1.S1_at--505--8051Chr07:23948198..23948222 (25 bp)
GGAGACGACGGAGTACTTCCATGGC
LOC_Os07g39920
Os.50281.1.S1_at--1037--10051Chr07:23948647..23948671 (25 bp)
TAGTATGTTCTTACCATTCAGCTCA
LOC_Os07g39920
Os.50281.1.S1_at--75--6932Chr07:23948649..23948673 (25 bp)
GTATGTTCTTACCATTCAGCTCAAA
LOC_Os07g39920
Os.50281.1.S1_at--481--6731Chr07:23948653..23948677 (25 bp)
GTTCTTACCATTCAGCTCAAATAGC
LOC_Os07g39920
Os.50281.1.S1_at--1137--10451Chr07:23948657..23948681 (25 bp)
TTACCATTCAGCTCAAATAGCATCT
LOC_Os07g39920
Os.50281.1.S1_at--51--3111Chr07:23948672..23948696 (25 bp)
AATAGCATCTGTTTGAGAATTATCA
LOC_Os07g39920
Os.50281.1.S1_at--714--4971Chr07:23948676..23948700 (25 bp)
GCATCTGTTTGAGAATTATCATATT
LOC_Os07g39920
Target Sequence 
AACCGCAGAGGAGAACGCGTTGCGCCTCGTGAAGGAGACGACGGAGTACTTCCATGGCGACGCCACCAAGGAGGAGCCTC
ACCCTCTGAGGATATTCGTGGTGGTGGATGAATTCCTCCTGATACTGGACCGTGTTTGCAGGGACGTCGGCAGGACGCCG
GAGAGGGTGATGATGGGCTCCGGTAAGTCGTTCCGCGTCCCTGCAGGTACCTCATTGCCGCCTCATCGGAATGAGAACCG
GCGAGTTCTTAGCTCCTCCGATGAGGACAGCTCGTCATCTTAGGAGCAAACATTTTTGGTGCATAGGTTAGCTGATAAGA
TTTGAGAGTAGTGATTCTTCCGGAGCTGAACATTGTGGTGTATAGACTGTAATCACCGTCAGAAATAAGGGAGTCGTCAC
TGTCTGTCACTGTTAAAAGTAGATGTTTACCAAAGCTAAAGAAAGGTAGCTGTACAAACTACAAAGGCATTCAGTATTAT
GGTAGTATGTTCTTACCATTCAGCTCAAATAGCATCTGTTTGAGAATTATCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis