Browse Element(s) Details


OsAffx.28832.1.S1_at

Description tigr:9635.m03987
TID=OsAffx.28832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3994010/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28832.1.S1_at--585--551Chr07:23956270..23956294 (25 bp)
ATCCCCTACCTTACTGAGGATCTGA
LOC_Os07g39940
OsAffx.28832.1.S1_at--682--2891Chr07:23956195..23956219 (25 bp)
AAGGTTGTTACACCAGTGGCTACCA
LOC_Os07g39940
OsAffx.28832.1.S1_at--702--5331NONE
GAAGTCTAGTGCTGCCATGACGGCA
NONE
OsAffx.28832.1.S1_at--369--2331Chr07:23956018..23956042 (25 bp)
AAAGATCCTATTGGCAGCGACGAAG
LOC_Os07g39940
OsAffx.28832.1.S1_at--731--5291Chr07:23955997..23956021 (25 bp)
GAAGGCGGCAACACCTACATTGATA
LOC_Os07g39940
OsAffx.28832.1.S1_at--437--2831Chr07:23955968..23955992 (25 bp)
AAGTTCTAGCAGTTGCACCTCAGAG
LOC_Os07g39940
OsAffx.28832.1.S1_at--941--1071Chr07:23955930..23955954 (25 bp)
AGGGCAACGCGAAGCCGAGCTCGAA
LOC_Os07g39940
OsAffx.28832.1.S1_at--299--5351Chr07:23955905..23955929 (25 bp)
GAAGATGGGTACTAGGGCCAACCGT
LOC_Os07g39940
OsAffx.28832.1.S1_at--785--6151Chr07:23955729..23955753 (25 bp)
GAGGATCCTGCAGAACTTGGTTCCC
LOC_Os07g39940
OsAffx.28832.1.S1_at--1141--4831Chr07:23955393..23955417 (25 bp)
GCTAAGCTCTGATGACACGTGGATG
LOC_Os07g39940
OsAffx.28832.1.S1_at--837--6891Chr07:23955369..23955393 (25 bp)
GTATGCACCAATCGCTTACAATGGA
LOC_Os07g39940
Target Sequence 
ATCCCCTACCTTACTGAGGATCTGATCAGCCCTCCACATGGCAACCATCCATCAGCAAGAGTGGAAGAAGCTACAAAGGT
TGTTACACCAGTGGCTACCAAGAGGAAGTCTAGTGCTGCCATGACGGCATCAAAGAAGAGCAAGAAGGCTGGCAAAAAAG
ATCCTATTGGCAGCGACGAAGGCGGCAACACCTACATTGATACGCAAAGTTCTAGCAGTTGCACCTCAGAGGAAGGAAAC
CTGGAGGGCAACGCGAAGCCGAGCTCGAAGAAGATGGGTACTAGGGCCAACCGTGGGGCGGCAACCGATCCCCAGAGTCT
CTATGCAAGGAAGAGGAGAGAGAGGATCAATGAAAGATTGAGGATCCTGCAGAACTTGGTTCCCAATGGAACAAAGGTTG
ACATCAGTACAATGCTGGAGGAAGCAGTGCAGTATGTCAAATTTTTGCAACTTCAGATTAAGTTGCTAAGCTCTGATGAC
ACGTGGATGTATGCACCAATCGCTTACAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis