Browse Element(s) Details


Os.22462.1.S1_at

Description gb:AK099482.1
DB_XREF= gi:32984691
TID=Os.22462.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025G13, full insert sequence.
FL= gb:AK099482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3990010/11Interferon-related developmental regulator family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22462.1.S1_at--540--7391Chr07:23927723..23927747 (25 bp)
GTGAGTGCCCTGAAGAATCTGTTAA
LOC_Os07g39900
Os.22462.1.S1_at--978--2351Chr07:23928070..23928094 (25 bp)
AAAGCTGAAACTCTGTCATCCACTG
LOC_Os07g39900
Os.22462.1.S1_at--1013--951NONE
AGGACCGCCGTTTAGCCCAGGAGAG
NONE
Os.22462.1.S1_at--1041--5251Chr07:23929212..23929236 (25 bp)
GAATGCCGTTATGTTGGACTTGGAC
LOC_Os07g39900
Os.22462.1.S1_at--376--6091Chr07:23929237..23929261 (25 bp)
GAGTAGCCTAGTGAAACTGCAGCCG
LOC_Os07g39900
Os.22462.1.S1_at--594--9291Chr07:23929274..23929298 (25 bp)
TCCGTTTAGCTGGACTTATCTGTAA
LOC_Os07g39900
Os.22462.1.S1_at--245--6531Chr07:23929317..23929341 (25 bp)
GATTTGTTATCACGACGCTATGCAA
LOC_Os07g39900
Os.22462.1.S1_at--242--9891Chr07:23929369..23929393 (25 bp)
TACTAGATCCAAACCAGTTCGTGTT
LOC_Os07g39900
Os.22462.1.S1_at--1031--1211Chr07:23929384..23929408 (25 bp)
AGTTCGTGTTTATCAACTCAGCAGT
LOC_Os07g39900
Os.22462.1.S1_at--322--1211Chr07:23929434..23929458 (25 bp)
AGTTTCTGTTGTCCGGTCGCTCAGA
LOC_Os07g39900
Os.22462.1.S1_at--279--7231Chr07:23929449..23929473 (25 bp)
GTCGCTCAGAGTGCCTTTACATGTG
LOC_Os07g39900
Target Sequence 
GTGAGTGCCCTGAAGAATCTGTTAAGATTTCAGGAAAGCGTGACGTTTTAAGGGTGTCATCATGGTCTGAATTGATTCAG
TTGAACTTCTTGAGNCGGTTTCTTGGGAGAGGCTTCCTCAAGCATGTGCAGGAGAATGGACTTCTTCAAGATGTGTTTGA
CATTAAGACTGACAAAGCTGAAACTCTGTCATCCACTGATAAGAAAATCTTCAGGTCTGGTGAAGAGAAAGGAAGAGCTC
TAAAGTTGAACAAGGACCGCCGTTTAGCCCAGGAGAGGAAGAATGCCGTTATGTTGGACTTGGACGAGTAGCCTAGTGAA
ACTGCAGCCGNTCGTCCTCTTCTCCGTTTAGCTGGACTTATCTGTAACGAGTGTTTGGAAGTCGCGATTTGTTATCACGA
CGCTATGCAAAGCAATACTGCAGAAATACTACTACTATACTAGATCCAAACCAGTTCGTGTTTATCAACTCAGCAGTGCC
TTTACATGTAAAGGTCTAANCCAGTTTCTGTTGTCCGGTCGCTCAGAGTGCCTTTACATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis