Browse Element(s) Details


OsAffx.28830.1.S1_x_at

Description tigr:9635.m03981
TID=OsAffx.28830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Armadillobeta-catenin-like repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3988011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28830.1.S1_x_at--1124--1391Chr07:23910920..23910944 (25 bp)
AGAAGGACGCCGCTACGGCCCTCTA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--150--1811Chr07:23911028..23911052 (25 bp)
ACCCGGAGACCGGCATGGTGGACAA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--187--4271Chr07:23911037..23911061 (25 bp)
CCGGCATGGTGGACAAGGCCGCCTA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--1147--5571Chr07:23911048..23911072 (25 bp)
GACAAGGCCGCCTACGTCTTGCACT
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--1143--6151Chr07:23911111..23911135 (25 bp)
GAGGAAGGCGGCATCCCCGTCCTCG
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--307--551Chr07:23911123..23911147 (25 bp)
ATCCCCGTCCTCGTCGAGATGGTGG
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--188--9511Chr07:23911184..23911208 (25 bp)
TCTCCCTCCTACAGATCTGCGAGGA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--972--1271Chr07:23911196..23911220 (25 bp)
AGATCTGCGAGGACAGCGCTGCCTA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--20--2711Chr07:23911294..23911421 (25 bp)
AAGCTCAAAACCAAGGCGGAGGCGC
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--747--891Chr07:23911416..23911440 (25 bp)
AGGCGCTGATCGAGATGCTACGGCA
LOC_Os07g39880
OsAffx.28830.1.S1_x_at--819--1291Chr07:23911428..23911452 (25 bp)
AGATGCTACGGCAGCCACGGAGCGC
LOC_Os07g39880
Target Sequence 
AGAAGGACGCCGCTACGGCCCTCTACGCGCTCTGCAGCGGCGCGCGCGAGAACCGCCTCCGCGCCGTGGAGGCCGGTGCC
GTGCGCCCACTGCTCGACCTCATGGCCGACCCGGAGACCGGCATGGTGGACAAGGCCGCCTACGTCTTGCACTCCCTCGT
CGGCATCGCCGAGGGCCGCTCCGCCGCCGTCGAGGAAGGCGGCATCCCCGTCCTCGTCGAGATGGTGGAGGTCGGCTCCC
CGCGGCAGAAGGAGATCGCCACCCTCTCCCTCCTACAGATCTGCGAGGACAGCGCTGCCTACCGCACCATGGTCGCCCGC
GAGGGCGCCATCCCTCCCCTCGTCGCCCTCTCCCAATCCTCCTCCGCCCGCCCCAAGCTCAAAACCAAGGCGGAGGCGCT
GATCGAGATGCTACGGCAGCCACGGAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28830.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis