Browse Element(s) Details


Os.23129.1.A1_s_at

Description gb:CR278310
DB_XREF= gi:44664876
DB_XREF=CR278310
CLONE=p548d12p3
TID=Os.23129.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23129 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564082.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23129.1.A1_s_at--151--8651Chr07:23887113..23887137 (25 bp)
TGGGCTGGGCAAGATACGCACACAC
LOC_Os07g39840
Os.23129.1.A1_s_at--92--4811Chr07:23887066..23887090 (25 bp)
TCCGGATTTTTCTTCATAAGGCCAA
LOC_Os07g39840
Os.23129.1.A1_s_at--351--8451Chr07:23887047..23887071 (25 bp)
GGCCAACAATTCCTTCTATTGAGCT
LOC_Os07g39840
Os.23129.1.A1_s_at--1047--10391Chr07:23887023..23887047 (25 bp)
TTTTGGATAGAGTAGCTGGCCGCCT
LOC_Os07g39840
Os.23129.1.A1_s_at--398--3071Chr07:23886984..23887008 (25 bp)
AATCATGGGATCAAGCTGTTTTCAA
LOC_Os07g39840
Os.23129.1.A1_s_at--183--2971Chr07:23886961..23886985 (25 bp)
AATGAGGAACTGTTCTTCCCCTCAC
LOC_Os07g39840
Os.23129.1.A1_s_at--295--10651Chr07:23886946..23886970 (25 bp)
TTCCCCTCACATCCAGGTTATGAAG
LOC_Os07g39840
Os.23129.1.A1_s_at--617--5311Chr07:23886925..23886949 (25 bp)
GAAGGTCTCCATATATCCAAAAGAA
LOC_Os07g39840
Os.23129.1.A1_s_at--243--7351Chr07:23886811..23886835 (25 bp)
GTGCACTTGAATTACCATCCTGATA
LOC_Os07g39840
Os.23129.1.A1_s_at--653--5111Chr07:23886733..23886757 (25 bp)
GCACTTGAACATTTTCCTGATGGAT
LOC_Os07g39840
Os.23129.1.A1_s_at--323--9811Chr07:23886692..23886716 (25 bp)
TAACTGTAGTTGTCGTAACACGGCA
LOC_Os07g39840
Target Sequence 
TGGGCTGGGCAAGATACGCACACACNATGCGCATATGGGTTTATAATTCCGGATTTTTCTTCATAAGGCCAACAATTCCT
TCTATTGAGCTTTTGGATAGAGTAGCTGGCCGCCTTTCTCGTGAACCCAAATCATGGGATCAAGCTGTTTTCAATGAGGA
ACTGTTCTTCCCCTCACATCCAGGTTATGAAGGTCTCCATATATCCAAAAGAACCATGGATATATACCAATTTATGAACA
GCAAAGTTCTATTCAAGACTGTGAGGAAAGATGCTAATCTGCGCAAGTTGAAGCCAGTGATTGTGCACTTGAATTACCAT
CCTGATAAGTCGGAACGCATGAAAGCAGTGATTGAGTTTTACGTCAATGGAAAACAGAATGCACTTGAACATTTTCCTGA
TGGATCAGAATAATAACTGATTAACTGTAGTTGTCGTAACACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23129.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis