Browse Element(s) Details


Os.54958.1.S1_at

Description gb:AK107187.1
DB_XREF= gi:32992396
TID=Os.54958.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H10, full insert sequence.
FL= gb:AK107187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3983010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54958.1.S1_at--363--6211Chr07:23884765..23884789 (25 bp)
GAGGCTCCCAAACAACTTGAACCGA
LOC_Os07g39830
Os.54958.1.S1_at--197--5331Chr07:23884803..23884827 (25 bp)
GAAGTCCCTCGTTCTGACAGGAATT
LOC_Os07g39830
Os.54958.1.S1_at--493--3471Chr07:23884820..23884844 (25 bp)
CAGGAATTTTCCGTGGGTGCGACCT
LOC_Os07g39830
Os.54958.1.S1_at--568--4091NONE
CGACGACGTGACATGGCAGGTGCCT
NONE
Os.54958.1.S1_at--502--8271Chr07:23885095..23885119 (25 bp)
GGCAGGTGCCTGAGTTCCAGCATCA
LOC_Os07g39830
Os.54958.1.S1_at--729--9671Chr07:23885117..23885141 (25 bp)
TCACCATCTCAAGCATCTGTAGTTC
LOC_Os07g39830
Os.54958.1.S1_at--387--4731Chr07:23885199..23885223 (25 bp)
GCTGTGAACCTGCAGAGCATTGCTC
LOC_Os07g39830
Os.54958.1.S1_at--1117--4371Chr07:23885237..23885261 (25 bp)
CCAAGCCTGCGATGTTGTGGCGAAT
LOC_Os07g39830
Os.54958.1.S1_at--661--5231Chr07:23885262..23885286 (25 bp)
GAATATGTTCTCTCCGGTGGGATCA
LOC_Os07g39830
Os.54958.1.S1_at--1121--1771Chr07:23885297..23885321 (25 bp)
ACCGGTGTTGTTATCAGTGTCCCAG
LOC_Os07g39830
Os.54958.1.S1_at--394--7893Chr07:23885397..23885421 (25 bp)
GGTTGACGCCGACTCTTTTAAATAT
LOC_Os07g39830
Target Sequence 
GAGGCTCCCAAACAACTTGAACCGATGTTCAGCAAGCTGAAGTCCCTCGTTCTGACAGGAATTTTCCGTGGGTGCGACCT
CTCGTGGACATTGTTCTTCCTCCAAGCAGCGCCGGTTTTGGAGGAATTTATACTCGAGGTGGACAAACCTTTAGATGCCA
AGGCACCGAGTGATATTTATGGCGAAATGCCGAAGACCGACGACGTGACATGGCAGGTGCCTGAGTTCCAGCATCACCAT
CTCAAGCATCTGTAGTTCAGTGGCTTCAATGAAGAAGAAATGCACTGGAGGATAGTGGAGCTTGTCAAGGAGAGAGCTGT
GAACCTGCAGAGCATTGCTCTGGATGACGGATGCCAAGCCTGCGATGTTGTGGCGAATGAATATGTTCTCTCCGGTGGGA
TCAAAAACAAGAAACCGGTGTTGTTATCAGTGTCCCAGATCACAGGATCTCCTCCTATTCTCACCCTTGTATAGAGGGTG
TATCCGGTGCCTTGTGCTCGCAGGCGAGTATAGGGTTGACGCCGACTCTTTTAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis