Browse Element(s) Details


Os.7009.1.S1_at

Description gb:AK103740.1
DB_XREF= gi:32988949
TID=Os.7009.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138K20, full insert sequence.
FL= gb:AK103740.1 gb:AK065768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3987010/11Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0018444cellular_componenttranslation release factor complex
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7009.1.S1_at--1032--6671Chr07:23903867..23903891 (25 bp)
GTTGCTCGCTTGAGTTTGTCACTAA
LOC_Os07g39870
Os.7009.1.S1_at--51--7871NONE
GGTATCTTGCGTTTACCAGCTAGAT
NONE
Os.7009.1.S1_at--572--4351Chr07:23903779..23903803 (25 bp)
CCAGCTAGATATCCGGTCATTTGAT
LOC_Os07g39870
Os.7009.1.S1_at--67--3091Chr07:23903703..23903727 (25 bp)
AATCACATGACTGTGCTGGCCCAGG
LOC_Os07g39870
Os.7009.1.S1_at--75--1611Chr07:23903666..23903690 (25 bp)
AGCTGCAACGAGTCTGATTCGCTCT
LOC_Os07g39870
Os.7009.1.S1_at--856--6571Chr07:23903651..23903675 (25 bp)
GATTCGCTCTACTTACGCAGGAACA
LOC_Os07g39870
Os.7009.1.S1_at--964--1671Chr07:23903494..23903518 (25 bp)
AGCCTCATCCTATGCTGGAAGGGAT
LOC_Os07g39870
Os.7009.1.S1_at--645--7931Chr07:23903459..23903483 (25 bp)
GGATTACTGAGTCACATCATCATGA
LOC_Os07g39870
Os.7009.1.S1_at--232--4991Chr07:23903400..23903424 (25 bp)
GCATGCTGTTGCCAAGGTCGTACTG
LOC_Os07g39870
Os.7009.1.S1_at--147--7011Chr07:23903381..23903405 (25 bp)
GTACTGGTTGTCTATTGTCTGCTTT
LOC_Os07g39870
Os.7009.1.S1_at--133--6731Chr07:23903338..23903362 (25 bp)
GTTCTGAATTCTAGTGTCTGCTTGA
LOC_Os07g39870
Target Sequence 
GTTGCTCGCTTGAGTTTGTCACTAATAAATCTCAAGAGGGATCTCAGTTTTGTAGAGGATTCGGTGGCATTGGTGGTATC
TTGCGTTTACCAGCTAGATATCCGGTCATTTGATGAGCTTTCTGACGATGAGGGATTGTATGAAGACTCTGATTAGCAAT
CAGCCAATCACATGACTGTGCTGGCCCAGGGAAGGACGCCGCAGCTGCAACGAGTCTGATTCGCTCTACTTACGCAGGAA
CACTTNCGAAAGCAGCTATCCAGAAATTGATGGGCGTGGGCCAGCCTCATCCTATGCTGGAAGGGATTAAGGCGAAAGGA
TTACTGAGTCACATCATCATGATAGTAATGTGTCAAGAAGTTATCGAACTTAAAAGGCATGCTGTTGCCAAGGTCGTACT
GGTTGTCTATTGTCTGCTTTTTGCAACTATATTCGCAAGTTCTGAATTCTAGTGTCTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis