Browse Element(s) Details


Os.7763.1.S1_x_at

Description gb:AK108192.1
DB_XREF= gi:32993401
TID=Os.7763.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C03, full insert sequence.
FL= gb:AK108192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3985011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7763.1.S1_x_at--687--3751Chr07:23892855..23892879 (25 bp)
CTCGGCTGGTGCTCGGGTTCAAGAA
LOC_Os07g39850
Os.7763.1.S1_x_at--1027--6612Chr07:23892839..23892863 (25 bp)
GTTCAAGAACCTGTTCGGCCGGAGA
LOC_Os07g39850
Os.7763.1.S1_x_at--364--5451Chr07:23892749..23892773 (25 bp)
GAACGACAAAGCCATGTCCACCGAT
LOC_Os07g39850
Os.7763.1.S1_x_at--851--8931Chr07:23892687..23892711 (25 bp)
TGACGCGGCCTCACCGGAGGAATCT
LOC_Os07g39850
Os.7763.1.S1_x_at--595--6191Chr07:23892671..23892695 (25 bp)
GAGGAATCTGTCCATCGTGTGATCC
LOC_Os07g39850
Os.7763.1.S1_x_at--1034--9411Chr07:23892657..23892681 (25 bp)
TCGTGTGATCCGAGCAATTGCGTGC
LOC_Os07g39850
Os.7763.1.S1_x_at--57--3191Chr07:23892643..23892667 (25 bp)
CAATTGCGTGCGTGTGCATGGCGAC
LOC_Os07g39850
Os.7763.1.S1_x_at--604--3011Chr07:23892615..23892639 (25 bp)
AATGCACGCATGCATGATCCGTGTG
LOC_Os07g39850
Os.7763.1.S1_x_at--916--6371Chr07:23892600..23892624 (25 bp)
GATCCGTGTGGTATATACATCTATC
LOC_Os07g39850
Os.7763.1.S1_x_at--1134--7391Chr07:23892568..23892592 (25 bp)
GTGATCTGATCATGTTGCCACTATC
LOC_Os07g39850
Os.7763.1.S1_x_at--144--3331Chr07:23892550..23892574 (25 bp)
CACTATCTTTGCACGGCCATATGAT
LOC_Os07g39850
Target Sequence 
CTCGGCTGGTGCTCGGGTTCAAGAACCTGTTCGGCCGGAGACCAGTCACCGCCGCCGCCGCCGCGCCGCCCANCGTCCGG
CGAACGCGCCGCTGCGCGNGTGAGCNNGAACGACAAAGCCATGTCCACCGATGCGCCGGAGCTCGACGCCGACGCCGACG
CCGACGAGCTGACGCGGCCTCACCGGAGGAATCTGTCCATCGTGTGATCCGAGCAATTGCGTGCGTGTGCATGGCGACTG
NAATGCACGCATGCATGATCCGTGTGGTATATACATCTATCAGGAGAAGTGATCTGATCATGTTGCCACTATCTTTGCAC
GGCCATATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7763.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis