Browse Element(s) Details


Os.57189.1.S1_at

Description gb:AK111111.1
DB_XREF= gi:32996320
TID=Os.57189.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A11, full insert sequence.
FL= gb:AK111111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g086305/11hypothetical protein
LOC_Os11g448801/11kinesin motor protein, putative, expressed
LOC_Os03g316341/11hypothetical protein
LOC_Os07g398401/11expressed protein
LOC_Os02g322101/11hypothetical protein
LOC_Os12g143601/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein
LOC_Os04g08610OsAffx.1353.1.S1_x_at1/114+4668544..4669146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08620OsAffx.28036.1.S1_at10/114+4670111..4670910hypothetical protein
LOC_Os04g08620Os.49232.1.S1_x_at1/114+4670111..4670910hypothetical protein
LOC_Os04g08630Os.57189.1.S1_at5/114+4675897..4676206hypothetical protein
LOC_Os04g08640OsAffx.25931.1.S1_at11/114+4678620..4679150embryogenesis transmembrane protein, putative, expressed
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein
LOC_Os04g08660OsAffx.25933.1.S1_at11/114+4689304..4689744hypothetical protein
LOC_Os04g08670OsAffx.22927.1.S1_x_at2/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08670OsAffx.20380.1.S1_at1/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57189.1.S1_at--756--12Chr07:23889617..23889637 (21 bp)
ATTGGCCTCGCCAGGTAAACCACCT
LOC_Os07g39840
Os.57189.1.S1_at--530--1551Chr04:4676066..4676090 (25 bp)
AGCTTGTTGCACTCTATTGTAGTAA
LOC_Os04g08630
Os.57189.1.S1_at--919--8751Chr04:4676049..4676073 (25 bp)
TGTAGTAAGCTGTTTCACTTTATTT
LOC_Os04g08630
Os.57189.1.S1_at--940--8634Chr08:28006462..28006481 (20 bp)
TGGGTTACATCTCCGGCTTCTGTCC
NONE
Os.57189.1.S1_at--118--4911Chr04:4675969..4675993 (25 bp)
GCTTCTGTCCATAGGCACACAACCA
LOC_Os04g08630
Os.57189.1.S1_at--1049--83736Chr12:13173524..13173543 (20 bp)
GGCGAGATGGGACAAATCCCCAACT
NONE
Os.57189.1.S1_at--1006--3011Chr04:4675894..4675918 (25 bp)
AATCCCCAACTTTTGCCGATAATAT
NONE
Os.57189.1.S1_at--325--6934Chr10:1143015..1143035 (21 bp)
GTAGGTACTACGCTATCCAAACTAG
NONE
Os.57189.1.S1_at--746--6691Chr04:4675785..4675809 (25 bp)
GTTCCTTGGCTACGTACCAATTCCA
NONE
Os.57189.1.S1_at--614--69718Chr12:2981769..2981792 (24 bp)
GTACCAATTCCAAGCGTGTAGCACC
NONE
Os.57189.1.S1_at--191--46729Chr12:2981781..2981805 (25 bp)
GCGTGTAGCACCATTGCGCATAGTA
NONE
Target Sequence 
ATTGGCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAG
AACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAG
ACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGC
TGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATTATTTTAGATAATGGAAATGGGTTACATCTCCGGCTTCTGTCC
ATAGGCACACAACCAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCAACTTTTG
CCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAGATTCTATCACGAAATTCTGTAGGTACTACGCTATCC
AAACTAGAATAAAAGTTCCTTGGCTACGTACCAATTCCAAGCGTGTAGCACCATTGCGCATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis