Browse Element(s) Details


OsAffx.25930.1.S1_at

Description tigr:9632.m00776
TID=OsAffx.25930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08560OsAffx.25929.1.S1_at11/114+4631708..4637648Protein phosphatase 2C containing protein, expressed
LOC_Os04g08570OsAffx.3749.1.S1_s_at11/114+4638807..4639709hypothetical protein
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein
LOC_Os04g08610OsAffx.1353.1.S1_x_at1/114+4668544..4669146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08620OsAffx.28036.1.S1_at10/114+4670111..4670910hypothetical protein
LOC_Os04g08620Os.49232.1.S1_x_at1/114+4670111..4670910hypothetical protein
LOC_Os04g08630Os.57189.1.S1_at5/114+4675897..4676206hypothetical protein
LOC_Os04g08640OsAffx.25931.1.S1_at11/114+4678620..4679150embryogenesis transmembrane protein, putative, expressed
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25930.1.S1_at--34--4711Chr04:4659292..4659316 (25 bp)
GCGGCGACGGGAGCTGAGCTCGCCA
LOC_Os04g08590
OsAffx.25930.1.S1_at--109--3791Chr04:4659310..4659334 (25 bp)
CTCGCCACTGCCACGGAGGTCGGCG
LOC_Os04g08590
OsAffx.25930.1.S1_at--595--5831Chr04:4659358..4659382 (25 bp)
GACCGGCCATGCAAGTGCGTGAGTC
LOC_Os04g08590
OsAffx.25930.1.S1_at--712--1771Chr04:4659359..4659383 (25 bp)
ACCGGCCATGCAAGTGCGTGAGTCC
LOC_Os04g08590
OsAffx.25930.1.S1_at--107--3931Chr04:4659361..4659385 (25 bp)
CGGCCATGCAAGTGCGTGAGTCCTG
LOC_Os04g08590
OsAffx.25930.1.S1_at--653--4311Chr04:4659364..4659388 (25 bp)
CCATGCAAGTGCGTGAGTCCTGGGC
LOC_Os04g08590
OsAffx.25930.1.S1_at--18--3531Chr04:4659365..4659389 (25 bp)
CATGCAAGTGCGTGAGTCCTGGGCC
LOC_Os04g08590
OsAffx.25930.1.S1_at--411--651Chr04:4659366..4659390 (25 bp)
ATGCAAGTGCGTGAGTCCTGGGCCT
LOC_Os04g08590
OsAffx.25930.1.S1_at--1117--5853Chr04:4659393..4659417 (25 bp)
GAGCCCGACGGGATTGGACCGCCAC
LOC_Os04g08590
OsAffx.25930.1.S1_at--47--1533Chr04:4659394..4659418 (25 bp)
AGCCCGACGGGATTGGACCGCCACG
LOC_Os04g08590
OsAffx.25930.1.S1_at--1003--7653Chr04:4659402..4659426 (25 bp)
GGGATTGGACCGCCACGGAGCTGCA
LOC_Os04g08590
Target Sequence 
GCGGCGACGGGAGCTGAGCTCGCCACTGCCACGGAGGTCGGCGCCGGCGCCGCTGGAGGCGAGATCGACCGGCCATGCAA
GTGCGTGAGTCCTGGGCCTGGGAGCCCGACGGGATTGGACCGCCACGGAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis