Browse Element(s) Details


OsAffx.25929.1.S1_at

Description tigr:9632.m00773
TID=OsAffx.25929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0856011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08530Os.40360.1.S1_x_at1/114+4606313..4608313Insect antifreeze protein
LOC_Os04g08540Os.45173.5.S1_x_at4/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.45173.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.2.A1_x_at2/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.3.A1_x_at1/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08550Os.55600.1.S1_at11/114+4625380..4628072oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os04g08560OsAffx.25929.1.S1_at11/114+4631708..4637648Protein phosphatase 2C containing protein, expressed
LOC_Os04g08570OsAffx.3749.1.S1_s_at11/114+4638807..4639709hypothetical protein
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25929.1.S1_at--622--4171Chr04:4634925..4634944 (20 bp)
CGCCATGTCGCGAGCATTAGCAGAA
LOC_Os04g08560
OsAffx.25929.1.S1_at--693--5291Chr04:4632790..4632814 (25 bp)
GAAGGAAGCAGTTTACTTGGCCCAA
LOC_Os04g08560
OsAffx.25929.1.S1_at--848--8031Chr04:4632213..4632237 (25 bp)
GGAGACAAGTACCTAAAGCCTGAAG
LOC_Os04g08560
OsAffx.25929.1.S1_at--134--2371Chr04:4632199..4632223 (25 bp)
AAAGCCTGAAGTCATATGTGAGCCA
LOC_Os04g08560
OsAffx.25929.1.S1_at--321--351Chr04:4632165..4632189 (25 bp)
ATAACCGTGAGGACCGTCGACGACG
LOC_Os04g08560
OsAffx.25929.1.S1_at--78--6271Chr04:4632108..4632132 (25 bp)
GATGTGATCTCAAACGAGACGGCCA
LOC_Os04g08560
OsAffx.25929.1.S1_at--373--771Chr04:4632080..4632104 (25 bp)
ATGTCGCTCGACATGCCTTGAAGAC
LOC_Os04g08560
OsAffx.25929.1.S1_at--942--2091Chr04:4632070..4632094 (25 bp)
ACATGCCTTGAAGACGGGAGCCCCA
LOC_Os04g08560
OsAffx.25929.1.S1_at--266--3711Chr04:4632027..4632051 (25 bp)
CTAGGAGCGGCGAAGCCGCTTCCAG
LOC_Os04g08560
OsAffx.25929.1.S1_at--286--8251Chr04:4631987..4632011 (25 bp)
GGCAGCAGCGGTAGGCCAAGAATCT
LOC_Os04g08560
OsAffx.25929.1.S1_at--606--4391Chr04:4631973..4631997 (25 bp)
GCCAAGAATCTGAGCCTCGCTGCTA
LOC_Os04g08560
Target Sequence 
CGCCATGTCGCGAGCATTAGCAGAAGGAAGCAGTTTACTTGGCCCAAAAGGAGACAAGTACCTAAAGCCTGAAGTCATAT
GTGAGCCAGACATCACCATAACCGTGAGGACCGTCGACGACGAATGCCTCATCCTCGCGAGCGATGGGATGTGGGATGTG
ATCTCAAACGAGACGGCCAGCGATGTCGCTCGACATGCCTTGAAGACGGGAGCCCCACCAGTGGGCGTCGCGCAGCTAGG
AGCGGCGAAGCCGCTTCCAGCAGCGCCGGTGCTCCGGCAGCAGCGGTAGGCCAAGAATCTGAGCCTCGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis