Browse Element(s) Details


OsAffx.25931.1.S1_at

Description tigr:9632.m00781
TID=OsAffx.25931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0864011/11embryogenesis transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein
LOC_Os04g08610OsAffx.1353.1.S1_x_at1/114+4668544..4669146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08620OsAffx.28036.1.S1_at10/114+4670111..4670910hypothetical protein
LOC_Os04g08620Os.49232.1.S1_x_at1/114+4670111..4670910hypothetical protein
LOC_Os04g08630Os.57189.1.S1_at5/114+4675897..4676206hypothetical protein
LOC_Os04g08640OsAffx.25931.1.S1_at11/114+4678620..4679150embryogenesis transmembrane protein, putative, expressed
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein
LOC_Os04g08660OsAffx.25933.1.S1_at11/114+4689304..4689744hypothetical protein
LOC_Os04g08670OsAffx.22927.1.S1_x_at2/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08670OsAffx.20380.1.S1_at1/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25931.1.S1_at--493--1571Chr04:4678666..4678690 (25 bp)
AGCTACGAGGCTGGCTGATGTTGCT
LOC_Os04g08640
OsAffx.25931.1.S1_at--852--2211Chr04:4678804..4678828 (25 bp)
ACAAGTCGCCGTGGCGCTACTACGT
LOC_Os04g08640
OsAffx.25931.1.S1_at--972--7191Chr04:4678859..4678883 (25 bp)
GTCGTCCGTGTGCATCATCGTCCTG
LOC_Os04g08640
OsAffx.25931.1.S1_at--1126--9531Chr04:4678897..4678921 (25 bp)
TCTACCTGAGCCATACCAGTGTCAT
LOC_Os04g08640
OsAffx.25931.1.S1_at--1015--1091Chr04:4678914..4678938 (25 bp)
AGTGTCATGGTCTTCAACGTGCTCG
LOC_Os04g08640
OsAffx.25931.1.S1_at--1034--7231Chr04:4678938..4678962 (25 bp)
GTCGCCCTGGACATGGCCAGCTTGG
LOC_Os04g08640
OsAffx.25931.1.S1_at--524--7191Chr04:4678985..4679009 (25 bp)
GTCGAGCAGCAAGCGGTTTACGGCT
LOC_Os04g08640
OsAffx.25931.1.S1_at--365--5011Chr04:4678993..4679017 (25 bp)
GCAAGCGGTTTACGGCTTTCAACGC
LOC_Os04g08640
OsAffx.25931.1.S1_at--929--811Chr04:4679025..4679049 (25 bp)
ATGGTATGCCTCGTCGTGCTGTTCC
LOC_Os04g08640
OsAffx.25931.1.S1_at--319--7311Chr04:4679040..4679064 (25 bp)
GTGCTGTTCCTCCTGTGGAAACTGA
LOC_Os04g08640
OsAffx.25931.1.S1_at--339--9711Chr04:4679093..4679117 (25 bp)
TCAAAATCCTGCTAGTGGAGGTGTC
LOC_Os04g08640
Target Sequence 
AGCTACGAGGCTGGCTGATGTTGCTGGCGACGCTGACGGCGTCCATCACGTACGCGGCGGCGCTGAACCCTCCCGGCGGC
GTCTGGCAAGCCGACGACGCCGCCAAGGACTTCGTCGCCGGCTACCCGGTCCTCCTCGACAAGTCGCCGTGGCGCTACTA
CGTCTTCTACTACTGCAACGCCACCTCCTTCGCGTCGTCCGTGTGCATCATCGTCCTGCTCGCCACCAACTTCTACCTGA
GCCATACCAGTGTCATGGTCTTCAACGTGCTCGTCGCCCTGGACATGGCCAGCTTGGGCGCCGCGTTCGTCGCGGGCTCG
TCGAGCAGCAAGCGGTTTACGGCTTTCAACGCGGGGCTGATGGTATGCCTCGTCGTGCTGTTCCTCCTGTGGAAACTGAA
GTTTCTCATGGGTAATGATCAAGCAGGTCAAAATCCTGCTAGTGGAGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis