Browse Element(s) Details


OsAffx.25933.1.S1_at

Description tigr:9632.m00783
TID=OsAffx.25933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0866011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein
LOC_Os04g08610OsAffx.1353.1.S1_x_at1/114+4668544..4669146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08620OsAffx.28036.1.S1_at10/114+4670111..4670910hypothetical protein
LOC_Os04g08620Os.49232.1.S1_x_at1/114+4670111..4670910hypothetical protein
LOC_Os04g08630Os.57189.1.S1_at5/114+4675897..4676206hypothetical protein
LOC_Os04g08640OsAffx.25931.1.S1_at11/114+4678620..4679150embryogenesis transmembrane protein, putative, expressed
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein
LOC_Os04g08660OsAffx.25933.1.S1_at11/114+4689304..4689744hypothetical protein
LOC_Os04g08670OsAffx.22927.1.S1_x_at2/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08670OsAffx.20380.1.S1_at1/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified
LOC_Os04g08690OsAffx.13730.1.S1_at11/114+4706976..4707464hypothetical protein
LOC_Os04g08700OsAffx.3751.1.S1_at11/114+4709985..4710823hypothetical protein
LOC_Os04g08710OsAffx.31287.1.S1_at1/114+4712869..4715343transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25933.1.S1_at--438--9971Chr04:4689682..4689706 (25 bp)
TACCAAGCATCAAACCCTAATTCCT
LOC_Os04g08660
OsAffx.25933.1.S1_at--457--3731Chr04:4689642..4689666 (25 bp)
CTACTCACTCTAGGCGCTAGGTGTA
LOC_Os04g08660
OsAffx.25933.1.S1_at--682--3691Chr04:4689626..4689650 (25 bp)
CTAGGTGTAGCACTAGCCTTGCTGC
LOC_Os04g08660
OsAffx.25933.1.S1_at--1029--10711Chr04:4689608..4689632 (25 bp)
TTGCTGCTCGCGTGTGCCTAGTGTC
LOC_Os04g08660
OsAffx.25933.1.S1_at--695--10071Chr04:4689590..4689614 (25 bp)
TAGTGTCGGCCGTCCGCAGATTCCC
LOC_Os04g08660
OsAffx.25933.1.S1_at--430--7271Chr04:4689425..4689449 (25 bp)
GTCCACAACTACGAGTGTTTCCCAG
LOC_Os04g08660
OsAffx.25933.1.S1_at--899--10291Chr04:4689408..4689432 (25 bp)
TTTCCCAGTGCCGTCTCAAAATTAG
LOC_Os04g08660
OsAffx.25933.1.S1_at--472--10291Chr04:4689387..4689411 (25 bp)
TTAGAGGCTCCGGTGGGAAATACAA
LOC_Os04g08660
OsAffx.25933.1.S1_at--137--8151Chr04:4689372..4689396 (25 bp)
GGAAATACAAAGTTGAGGCCTCAAA
LOC_Os04g08660
OsAffx.25933.1.S1_at--697--8871Chr04:4689359..4689383 (25 bp)
TGAGGCCTCAAACGAGCCAAGCTGA
LOC_Os04g08660
OsAffx.25933.1.S1_at--532--2671Chr04:4689341..4689365 (25 bp)
AAGCTGAGCCGAGCCAGTTTTTAGC
LOC_Os04g08660
Target Sequence 
TACCAAGCATCAAACCCTAATTCCTCTCCCTGATCCCCTCCTACTCACTCTAGGCGCTAGGTGTAGCACTAGCCTTGCTG
CTCGCGTGTGCCTAGTGTCGGCCGTCCGCAGATTCCCAGCGCCGCCATCTGATGGCATCCCCGCGCTCCTGCCCCCGGCA
CCGCTCGCCTGCGAACGCCCCGTGCAGCCGCCTCCTGTTGGCATCCCAGCGCCCTGCACCCCAGCGAGCACGAACGCCGC
CACCTGCCGCCAGCACCGTCCACAACTACGAGTGTTTCCCAGTGCCGTCTCAAAATTAGAGGCTCCGGTGGGAAATACAA
AGTTGAGGCCTCAAACGAGCCAAGCTGAGCCGAGCCAGTTTTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis