Browse Element(s) Details


OsAffx.13730.1.S1_at

Description tigr:9632.m00786
TID=OsAffx.13730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein
LOC_Os04g08660OsAffx.25933.1.S1_at11/114+4689304..4689744hypothetical protein
LOC_Os04g08670OsAffx.22927.1.S1_x_at2/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08670OsAffx.20380.1.S1_at1/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified
LOC_Os04g08690OsAffx.13730.1.S1_at11/114+4706976..4707464hypothetical protein
LOC_Os04g08700OsAffx.3751.1.S1_at11/114+4709985..4710823hypothetical protein
LOC_Os04g08710OsAffx.31287.1.S1_at1/114+4712869..4715343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08720OsAffx.22421.4.S1_x_at2/114+4717065..4717874transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08730OsAffx.25934.1.S1_at11/114+4719296..4719547hypothetical protein
LOC_Os04g08740Os.14934.2.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08740Os.14934.1.S1_at11/114+4725354..4729281GAF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13730.1.S1_at--1087--2251Chr04:4707296..4707320 (25 bp)
AAATCAATCATCTCACTGCTGCCGC
LOC_Os04g08690
OsAffx.13730.1.S1_at--822--8571Chr04:4707253..4707277 (25 bp)
TGGTATTGTCATCGAGCCAGCCAGC
LOC_Os04g08690
OsAffx.13730.1.S1_at--576--5931Chr04:4707195..4707219 (25 bp)
GAGCATGCATCAGCAGATCCAGCCG
LOC_Os04g08690
OsAffx.13730.1.S1_at--329--3371Chr04:4707176..4707200 (25 bp)
CAGCCGCCCCTAAGTAGAGTGGATG
LOC_Os04g08690
OsAffx.13730.1.S1_at--835--4692Chr08:13996940..13996991 (24 bp)
GCGGCCGAGATCAAGCAATGATGAC
NONE
OsAffx.13730.1.S1_at--1108--8851Chr04:4707121..4707145 (25 bp)
TGATGACACGTCGAACTGGTCCTAC
LOC_Os04g08690
OsAffx.13730.1.S1_at--596--8571Chr04:4707105..4707129 (25 bp)
TGGTCCTACCCCACGGCCAGGGAGG
LOC_Os04g08690
OsAffx.13730.1.S1_at--967--3751Chr04:4707051..4707075 (25 bp)
CTCTTCATCTCTTGCTGCTCAGGAT
LOC_Os04g08690
OsAffx.13730.1.S1_at--1129--3751Chr04:4707043..4707067 (25 bp)
CTCTTGCTGCTCAGGATCTCATTGA
LOC_Os04g08690
OsAffx.13730.1.S1_at--888--6411Chr04:4707029..4707053 (25 bp)
GATCTCATTGAGAGCAGCCTGTCCG
LOC_Os04g08690
OsAffx.13730.1.S1_at--75--1691Chr04:4707014..4707038 (25 bp)
AGCCTGTCCGGGTCTCGGAGCTCAG
LOC_Os04g08690
Target Sequence 
AAATCAATCATCTCACTGCTGCCGCTTGACCCACCACCGCCGCTGGTATTGTCATCGAGCCAGCCAGCCCCGTGCTCGTG
GTCGCGGATCCGGCCTCCCACGAGCATGCATCAGCAGATCCAGCCGCCCCTAAGTAGAGTGGATGAGGGGAGAAGGGGCG
GCCGAGATCAAGCAATGATGACACGTCGAACTGGTCCTACCCCACGGCCAGGGAGGGCGAGGCCGCGCTTGGGGCGTCGC
GTCACCTCTTCATCTCTTGCTGCTCAGGATCTCATTGAGAGCAGCCTGTCCGGGTCTCGGAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis