Browse Element(s) Details


Os.14934.1.S1_at

Description gb:AY136816.2
DB_XREF= gi:32527640
GEN=ETR2
TID=Os.14934.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14934 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR2) mRNA, complete cds.
PROD=putative ethylene receptor
FL= gb:AY136816.2 gb:AK111748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0874011/11GAF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified
LOC_Os04g08690OsAffx.13730.1.S1_at11/114+4706976..4707464hypothetical protein
LOC_Os04g08700OsAffx.3751.1.S1_at11/114+4709985..4710823hypothetical protein
LOC_Os04g08710OsAffx.31287.1.S1_at1/114+4712869..4715343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08720OsAffx.22421.4.S1_x_at2/114+4717065..4717874transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08730OsAffx.25934.1.S1_at11/114+4719296..4719547hypothetical protein
LOC_Os04g08740Os.14934.2.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08740Os.14934.1.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08750OsAffx.30618.1.S1_at6/114+4735894..4736709hypothetical protein
LOC_Os04g08760OsAffx.13731.1.S1_at11/114+4751135..4752152hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009625biological_processresponse to insect
GO:0009690biological_processcytokinin metabolism
GO:0009727biological_processdetection of ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0005783cellular_componentendoplasmic reticulum
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000156molecular_functiontwo-component response regulator activity
GO:0004673molecular_functionprotein histidine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0004872molecular_functionreceptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14934.1.S1_at--988--8271Chr04:4728569..4728593 (25 bp)
GGCATCCAATGCATCAACTCCTTTG
LOC_Os04g08740
Os.14934.1.S1_at--590--2551Chr04:4728584..4728608 (25 bp)
AACTCCTTTGCCAGTGCTGAGTCAT
LOC_Os04g08740
Os.14934.1.S1_at--920--6091Chr04:4728602..4728626 (25 bp)
GAGTCATCTTTCCAGCTGGTGGTTC
LOC_Os04g08740
Os.14934.1.S1_at--1--10771Chr04:4728627..4728651 (25 bp)
TTGACCTCACCATGCGTACAATGGA
LOC_Os04g08740
Os.14934.1.S1_at--647--8831Chr04:4728708..4728732 (25 bp)
TGATAGTTGCTCTTGCGGCAAGCAC
LOC_Os04g08740
Os.14934.1.S1_at--42--2651Chr04:4728727..4728751 (25 bp)
AAGCACCGATGACACCGTTCGGGAT
LOC_Os04g08740
Os.14934.1.S1_at--637--7811Chr04:4728776..4728800 (25 bp)
GGTCTGATCCAAAAACCAGTCACTT
LOC_Os04g08740
Os.14934.1.S1_at--841--2771Chr04:4728848..4728872 (25 bp)
AAGAGCCTCATGGTTCTCATTTCTT
LOC_Os04g08740
Os.14934.1.S1_at--865--6771Chr04:4728907..4728931 (25 bp)
GTTACTACGCTACTAGTTTCTGCCA
LOC_Os04g08740
Os.14934.1.S1_at--937--6831Chr04:4728922..4728946 (25 bp)
GTTTCTGCCAGGTTAGGTCCATACA
LOC_Os04g08740
Os.14934.1.S1_at--537--9171Chr04:4728998..4729022 (25 bp)
TGCCTTTACCTTGGTTCCTTGGTGA
LOC_Os04g08740
Target Sequence 
GGCATCCAATGCATCAACTCCTTTGCCAGTGCTGAGTCATCTTTCCAGCTGGTGGTTCTTGACCTCACCATGCGTACAAT
GGATGGATTTGATGTAGCTCTTGCAATCAGGAAGTTCAGGGGGAATTGTTGGCCACCGNTGATAGTTGCTCTTGCGGCAA
GCACCGATGACACCGTTCGGGATCGGTGCCAGCAGGCAGGAATAAACGGTCTGATCCAAAAACCAGTCACTTTAGCAGCA
CTGGGAGATGAACTGTATAGAGTCCTTCAAAACAATTGAAAGAGCCTCATGGTTCTCATTTCTTTCAATCTCAATAGATT
GCTGTAGCTTGATTAATAGTTACTACGCTACTAGTTTCTGCCAGGTTAGGTCCATACAATCACAAAACATTTGCACAAAC
NAAATGTATAGGGAGATATTAAAACATCCTGCCTTTACCTTGGTTCCTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis