Browse Element(s) Details


OsAffx.13731.1.S1_at

Description tigr:9632.m00794
TID=OsAffx.13731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0876011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08740Os.14934.2.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08740Os.14934.1.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08750OsAffx.30618.1.S1_at6/114+4735894..4736709hypothetical protein
LOC_Os04g08760OsAffx.13731.1.S1_at11/114+4751135..4752152hypothetical protein
LOC_Os04g08764Os.47980.1.S1_at11/114+4756873..4759024Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os04g08764OsAffx.27143.1.S1_at1/114+4756873..4759024Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os04g08768OsAffx.5954.5.S1_x_at4/114+4764388..4765587retrotransposon protein, putative, unclassified
LOC_Os04g08772OsAffx.5954.1.S1_x_at3/114+4766364..4767992retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08776OsAffx.828.1.S1_x_at1/114+4769547..4770809retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08780OsAffx.19542.3.S1_x_at5/114+4772337..4776278retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13731.1.S1_at--448--9051Chr04:4751818..4751839 (22 bp)
TGCAGGATGCAACAGATCAGGTAGA
LOC_Os04g08760
OsAffx.13731.1.S1_at--7--411Chr04:4752040..4752061 (22 bp)
ATCAGGTAGAGAGATCAGCCAATCA
LOC_Os04g08760
OsAffx.13731.1.S1_at--338--6951Chr04:4752042..4752066 (25 bp)
GTAGAGAGATCAGCCAATCAGGTTC
LOC_Os04g08760
OsAffx.13731.1.S1_at--908--6011Chr04:4752045..4752069 (25 bp)
GAGAGATCAGCCAATCAGGTTCAAA
LOC_Os04g08760
OsAffx.13731.1.S1_at--246--6431Chr04:4752049..4752073 (25 bp)
GATCAGCCAATCAGGTTCAAAATTC
LOC_Os04g08760
OsAffx.13731.1.S1_at--351--4391Chr04:4752054..4752078 (25 bp)
GCCAATCAGGTTCAAAATTCAGCAG
LOC_Os04g08760
OsAffx.13731.1.S1_at--392--3071Chr04:4752057..4752081 (25 bp)
AATCAGGTTCAAAATTCAGCAGTTT
LOC_Os04g08760
OsAffx.13731.1.S1_at--574--2451Chr04:4752067..4752091 (25 bp)
AAAATTCAGCAGTTTGGGGTCCAGA
LOC_Os04g08760
OsAffx.13731.1.S1_at--437--7151Chr04:4752085..4752109 (25 bp)
GTCCAGAAGCTGTGAAAGGGCTTTC
LOC_Os04g08760
OsAffx.13731.1.S1_at--821--7351Chr04:4752096..4752120 (25 bp)
GTGAAAGGGCTTTCACCTCTTCTCT
LOC_Os04g08760
OsAffx.13731.1.S1_at--635--5571Chr04:4752098..4752122 (25 bp)
GAAAGGGCTTTCACCTCTTCTCTTT
LOC_Os04g08760
Target Sequence 
TGCAGGATGCAACAGATCAGGTAGAGAGATCAGCCAATCAGGTTCAAAATTCAGCAGTTTGGGGTCCAGAAGCTGTGAAA
GGGCTTTCACCTCTTCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis