Browse Element(s) Details


Os.47980.1.S1_at

Description gb:AK062453.1
DB_XREF= gi:32972471
TID=Os.47980.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C07, full insert sequence.
FL= gb:AK062453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0876411/11Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08750OsAffx.30618.1.S1_at6/114+4735894..4736709hypothetical protein
LOC_Os04g08760OsAffx.13731.1.S1_at11/114+4751135..4752152hypothetical protein
LOC_Os04g08764Os.47980.1.S1_at11/114+4756873..4759024Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os04g08764OsAffx.27143.1.S1_at1/114+4756873..4759024Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os04g08768OsAffx.5954.5.S1_x_at4/114+4764388..4765587retrotransposon protein, putative, unclassified
LOC_Os04g08772OsAffx.5954.1.S1_x_at3/114+4766364..4767992retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08776OsAffx.828.1.S1_x_at1/114+4769547..4770809retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08780OsAffx.19542.3.S1_x_at5/114+4772337..4776278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08784OsAffx.5954.3.S1_x_at2/114+4778007..4779050Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47980.1.S1_at--362--1411Chr04:4757474..4757498 (25 bp)
AGACATTGTATTTCGCGGACAGGGA
LOC_Os04g08764
Os.47980.1.S1_at--888--591Chr04:4757431..4757455 (25 bp)
ATGCGAATTGCTTGTCGGGCTAAAT
LOC_Os04g08764
Os.47980.1.S1_at--161--4831Chr04:4757413..4757437 (25 bp)
GCTAAATTACATCTGCCGGTATGAG
LOC_Os04g08764
Os.47980.1.S1_at--502--5271Chr04:4757380..4757404 (25 bp)
GAATGCACTGCTGGATTGCTCTAGT
LOC_Os04g08764
Os.47980.1.S1_at--434--7931Chr04:4757368..4757392 (25 bp)
GGATTGCTCTAGTAGTCTCGACTTC
LOC_Os04g08764
Os.47980.1.S1_at--210--7171Chr04:4757354..4757378 (25 bp)
GTCTCGACTTCGACGATTGTATGGA
LOC_Os04g08764
Os.47980.1.S1_at--426--6111Chr04:4757314..4757338 (25 bp)
GAGTCCATCAGTCCAAGGTCAGGTT
LOC_Os04g08764
Os.47980.1.S1_at--666--7111Chr04:4757297..4757321 (25 bp)
GTCAGGTTTCTGCTTGGTTCCATAG
LOC_Os04g08764
Os.47980.1.S1_at--417--1011Chr04:4757149..4757173 (25 bp)
AGGATTGCCTAATGCTTTTGTTCAC
LOC_Os04g08764
Os.47980.1.S1_at--383--6511Chr04:4757120..4757144 (25 bp)
GATATGCTCTGTCTAACTCAGTTGT
LOC_Os04g08764
Os.47980.1.S1_at--1023--7071Chr04:4756939..4756963 (25 bp)
GTCACAAAGTTTTACTCCTCTGTTT
LOC_Os04g08764
Target Sequence 
AGACATTGTATTTCGCGGACAGGGAGAAGACGGAGGCCGTGATATGCGAATTGCTTGTCGGGCTAAATTACATCTGCCGG
TATGAGCAGCAACAGAATGCACTGCTGGATTGCTCTAGTAGTCTCGACTTCGACGATTGTATGGAGTGGCAACTGCAGTA
GAGTCCATCAGTCCAAGGTCAGGTTTCTGCTTGGTTCCATAGTGTACAAGGAATATGAAACAACAAAGGGTACTTGTGTT
TTGGTTTGGATTTTTTTCTCTTCTGTTTTTTTGGGTGCAAGTTGCACATGAGATCATCTATCATTCATAGATGAAAAAAA
TTTATAGGATTGCCTAATGCTTTTGTTCACTTGAGATATGCTCTGTCTAACTCAGTTGTACATAAATGAATGTTTTGTGC
CAAAGCAAATGAGCAATCTCAAGTGTCCAAAAGGGGTTTGTGCCTTAGTAAAATTCACCTTTTTTATTTTGTATTTGGTA
GGACATGTTTGTGGATAACTAGTTGAAAGTATCCTATTTGGTATTTGGTAGTGAAGTCACAAAGTTTTACTCCTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis