Browse Element(s) Details

OsAffx.27143.1.S1_at

Description

tigr:9634.m01066
TID=OsAffx.27143.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10940	11/11	hypothetical protein
LOC_Os05g33670	3/11	hypothetical protein
LOC_Os04g08764	1/11	Avr9/Cf-9 rapidly elicited protein 137, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10900	OsAffx.27559.2.S1_x_at	11/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10900	OsAffx.27559.1.S1_x_at	7/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10910	Os.53557.1.S1_at	11/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910	OsAffx.15364.2.S1_x_at	1/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920	OsAffx.15362.1.S1_at	11/11	6	+	5704392..5706867	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_x_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	OsAffx.15364.2.S1_x_at	1/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940	OsAffx.27143.1.S1_at	11/11	6	+	5716069..5716479	hypothetical protein
LOC_Os06g10950	OsAffx.15364.2.S1_x_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	OsAffx.15364.2.S1_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	Os.54289.1.S1_x_at	1/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960	OsAffx.15364.1.S1_at	11/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960	OsAffx.15364.2.S1_x_at	1/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970	Os.53163.1.S1_at	11/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970	OsAffx.15364.2.S1_x_at	1/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980	OsAffx.4795.1.S1_at	11/11	6	+	5733508..5735154	Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27143.1.S1_at--779--397	3	Chr06:5716100..5716124 (25 bp)	CGGTGACGAGTAGCGGCAAGGGCGG	LOC_Os06g10940
OsAffx.27143.1.S1_at--748--65	2	Chr06:5716154..5716178 (25 bp)	ATGACGGGAAGGTCGACATCCTGTC	LOC_Os06g10940
OsAffx.27143.1.S1_at--502--575	2	Chr06:5716156..5716180 (25 bp)	GACGGGAAGGTCGACATCCTGTCGT	LOC_Os06g10940
OsAffx.27143.1.S1_at--725--531	2	Chr06:5716161..5716185 (25 bp)	GAAGGTCGACATCCTGTCGTTCGAG	LOC_Os06g10940
OsAffx.27143.1.S1_at--472--387	1	Chr06:5716174..5716198 (25 bp)	CTGTCGTTCGAGGTGGCCAACGCTA	LOC_Os06g10940
OsAffx.27143.1.S1_at--771--719	1	Chr06:5716176..5716200 (25 bp)	GTCGTTCGAGGTGGCCAACGCTATG	LOC_Os06g10940
OsAffx.27143.1.S1_at--516--1063	1	Chr06:5716180..5716204 (25 bp)	TTCGAGGTGGCCAACGCTATGTCGC	LOC_Os06g10940
OsAffx.27143.1.S1_at--1066--937	1	Chr06:5716181..5716205 (25 bp)	TCGAGGTGGCCAACGCTATGTCGCG	LOC_Os06g10940
OsAffx.27143.1.S1_at--1025--261	2	Chr06:5716213..5716237 (25 bp)	AACCTGTATCCGCTCGCTGTCGGAC	LOC_Os06g10940
OsAffx.27143.1.S1_at--854--915	2	Chr06:5716290..5716314 (25 bp)	TGCGCTCGTGCCAGGCGACGACTCG	LOC_Os06g10940
OsAffx.27143.1.S1_at--484--941	2	Chr06:5716295..5716319 (25 bp)	TCGTGCCAGGCGACGACTCGTGGCT	LOC_Os06g10940

Target Sequence

CGGTGACGAGTAGCGGCAAGGGCGGCGCGGCGGCGGCGGCGGCAGAGGGGGTGGATGACGGGAAGGTCGACATCCTGTCG
TTCGAGGTGGCCAACGCTATGTCGCGCGCCGCCAACCTGTATCCGCTCGCTGTCGGACNCCGAGGCGGCGCGGCTGCTCN
CCNGCNCTGCCTCGGCTCCCAGGCCGTGCGTGCGCTCGTGCCAGGCGACGACTCGTGGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis