Browse Element(s) Details


Os.53557.1.S1_at

Description gb:AK073279.1
DB_XREF= gi:32983302
TID=Os.53557.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024H19, full insert sequence.
FL= gb:AK073279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1091011/11Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10880Os.54299.1.S1_at11/116+5676158..5681034bZIP transcription factor family protein, expressed
LOC_Os06g10890Os.12873.1.S1_at3/116+5687803..5689348expressed protein
LOC_Os06g10900OsAffx.27559.2.S1_x_at11/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10900OsAffx.27559.1.S1_x_at7/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10910Os.53557.1.S1_at11/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910OsAffx.15364.2.S1_x_at1/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920OsAffx.15362.1.S1_at11/116+5704392..5706867Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_x_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930OsAffx.15364.2.S1_x_at1/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940OsAffx.27143.1.S1_at11/116+5716069..5716479hypothetical protein
LOC_Os06g10950OsAffx.15364.2.S1_x_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950OsAffx.15364.2.S1_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950Os.54289.1.S1_x_at1/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960OsAffx.15364.1.S1_at11/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960OsAffx.15364.2.S1_x_at1/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53557.1.S1_at--630--9311Chr06:5703398..5703422 (25 bp)
TCCCTGGAGTCGTCGTGAGCGGCCA
LOC_Os06g10910
Os.53557.1.S1_at--930--7571Chr06:5703478..5703502 (25 bp)
GGGCTCAACTCGTGGTACCACGACA
LOC_Os06g10910
Os.53557.1.S1_at--976--551Chr06:5703505..5703529 (25 bp)
ATCCGGGACATGTACTGGCGGTCGC
LOC_Os06g10910
Os.53557.1.S1_at--737--751Chr06:5703628..5703652 (25 bp)
ATGTACCTGCTGAGCTTGACGGACA
LOC_Os06g10910
Os.53557.1.S1_at--749--5611Chr06:5703649..5703673 (25 bp)
GACAAGATCGTCACCAGCGGCTGGT
LOC_Os06g10910
Os.53557.1.S1_at--409--2651Chr06:5703730..5703754 (25 bp)
AAGCCGGAGAACCACACGGTGCCGA
LOC_Os06g10910
Os.53557.1.S1_at--195--4511Chr06:5703804..5703828 (25 bp)
GCCGTACTTCGAGTGCACCAAGAAA
LOC_Os06g10910
Os.53557.1.S1_at--431--2631Chr06:5703856..5703880 (25 bp)
AACCTGGTGCCTCATGTCCGATCAT
LOC_Os06g10910
Os.53557.1.S1_at--644--7251Chr06:5703871..5703895 (25 bp)
GTCCGATCATGCGAGGACGTGCCAT
LOC_Os06g10910
Os.53557.1.S1_at--925--7631Chr06:5703897..5703921 (25 bp)
GGGACGCAAACTGGCTGATCCTATT
LOC_Os06g10910
Os.53557.1.S1_at--217--8331Chr06:5703909..5703933 (25 bp)
GGCTGATCCTATTAGCTAAACCAAA
LOC_Os06g10910
Target Sequence 
TCCCTGGAGTCGTCGTGAGCGGCCACGGCGGCGGCGTCGCGCCGCCGCCGATCGCGCGGTCCAAGGCCGTCCTGACGACG
GGGCTCAACTCGTGGTACCACGACAGCATCCGGGACATGTACTGGCGGTCGCCGTCGGCCACCGGCGAGGTGGTGAGCGT
GCACCAGCCGAGCCACGAGCTGCACCAGCACTTCTTCCGGAGCACCCACGACATGAAGGCCCTCGCCGAGATGTACCTGC
TGAGCTTGACGGACAAGATCGTCACCAGCGGCTGGTCGACGTTCGGCTACGTCGGCGCCGGCCTCGGCGGCCTCACGCCG
TACATCATGATCAAGCCGGAGAACCACACGGTGCCGAACCCGCCGTGCGTCAGGGCCATGTCCATGGAGCCCTGCGACCA
CGGGCCGCCGTACTTCGAGTGCACCAAGAAAGAGATCGACAAGATCATCGACACCGGCAACCTGGTGCCTCATGTCCGAT
CATGCGAGGACGTGCCATGGGGACGCAAACTGGCTGATCCTATTAGCTAAACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis