Browse Element(s) Details

Os.54289.1.S1_x_at

Description

gb:AK103086.1
DB_XREF= gi:32988295
TID=Os.54289.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118I03, full insert sequence.
FL= gb:AK103086.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10930	11/11	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10950	1/11	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10890	Os.12873.1.S1_at	3/11	6	+	5687803..5689348	expressed protein
LOC_Os06g10900	OsAffx.27559.2.S1_x_at	11/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10900	OsAffx.27559.1.S1_x_at	7/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10910	Os.53557.1.S1_at	11/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910	OsAffx.15364.2.S1_x_at	1/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920	OsAffx.15362.1.S1_at	11/11	6	+	5704392..5706867	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_x_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	OsAffx.15364.2.S1_x_at	1/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940	OsAffx.27143.1.S1_at	11/11	6	+	5716069..5716479	hypothetical protein
LOC_Os06g10950	OsAffx.15364.2.S1_x_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	OsAffx.15364.2.S1_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	Os.54289.1.S1_x_at	1/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960	OsAffx.15364.1.S1_at	11/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960	OsAffx.15364.2.S1_x_at	1/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970	Os.53163.1.S1_at	11/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970	OsAffx.15364.2.S1_x_at	1/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980	OsAffx.4795.1.S1_at	11/11	6	+	5733508..5735154	Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0009969	biological_process	xyloglucan biosynthesis
GO:0008417	molecular_function	fucosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54289.1.S1_x_at--1158--643	2	Chr06:5711731..5711755 (25 bp)	GATCACCTCGCTCAAGTCGTGGTAC	LOC_Os06g10930
Os.54289.1.S1_x_at--20--863	1	Chr06:5711654..5711678 (25 bp)	TGGTGGTGTTCGACCAGCCGAGCCA	LOC_Os06g10930
Os.54289.1.S1_x_at--443--395	1	Chr06:5711579..5711603 (25 bp)	CGGAGATGTACCTGCTGAGCACGAC	LOC_Os06g10930
Os.54289.1.S1_x_at--570--811	1	Chr06:5711434..5711458 (25 bp)	GGACATGTCCATGGAGCCGTGCTTC	LOC_Os06g10930
Os.54289.1.S1_x_at--1004--189	1	Chr06:5711408..5711432 (25 bp)	ACGTCGCGCCGCTGTACGACTGCAA	LOC_Os06g10930
Os.54289.1.S1_x_at--346--509	1	Chr06:5711353..5711377 (25 bp)	GCACGTTCGGCACTGCCACGACATG	LOC_Os06g10930
Os.54289.1.S1_x_at--725--757	1	Chr06:5711322..5711346 (25 bp)	GGGCTCAAGCTTGTCGACCGAACGG	LOC_Os06g10930
Os.54289.1.S1_x_at--211--935	1	Chr06:5711309..5711333 (25 bp)	TCGACCGAACGGAGTGGTGAAGCAA	LOC_Os06g10930
Os.54289.1.S1_x_at--11--569	1	Chr06:5711238..5711262 (25 bp)	GACATTATTGATATCGTGAGTTACT	LOC_Os06g10930
Os.54289.1.S1_x_at--666--1019	1	Chr06:5711173..5711197 (25 bp)	TATTTCCAGTACCTTCTCAAAGATA	LOC_Os06g10930
Os.54289.1.S1_x_at--1065--951	2	Chr12:27463484..27463689 (25 bp)	TCTCAAAGATAATAAAGGCCCCGTT	NONE

Target Sequence

GATCACCTCGCTCAAGTCGTGGTACTACGAGAAGATGAAGGGGATGTACTGGGAGAGGGCGACGGAGTCCGGCGAGGTGG
TGGTGTTCGACCAGCCGAGCCACGAGGAGCAGCAGATGTACGGCGTGAGGGCGCACGAGCGGAAGGCGTGGGCGGAGATG
TACCTGCTGAGCACGACGGACGTGCTGGTGACGACGGGGACGTCGACGTTCGGGTACGTGGCGCAGGGGCTCGGCGGGCT
GACGCCGTGGGTGCTGCCGCGCCGGGAGGTGAACGGCACGGCGCCGCCGTGCCGCCGGGACATGTCCATGGAGCCGTGCT
TCCACGTCGCGCCGCTGTACGACTGCAAGCGGTGGGAGGACGCCGGCAAGATCGTGCCGCACGTTCGGCACTGCCACGAC
ATGCCCGCGGGGCTCAAGCTTGTCGACCGAACGGAGTGGTGAAGCAAAGAGAAGTGCTTGAGAAAGTATATCGAGATACA
TAAATTTTAAACTGACATTATTGATATCGTGAGTTACTATTTAGTAGGTATTAAAATACTAAATTTTATAGTAGAAAATA
TTTCCAGTACCTTCTCAAAGATAATAAAGGCCCCGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis