Browse Element(s) Details


OsAffx.28036.1.S1_at

Description tigr:9632.m00779
TID=OsAffx.28036.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4118011/11hypothetical protein
LOC_Os04g0862010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41150OsAffx.28034.1.S1_at11/116+24624709..24625739hypothetical protein
LOC_Os06g41160OsAffx.28035.1.S1_at11/116+24626695..24627654hypothetical protein
LOC_Os06g41170NANA6+24634716..24635111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g41180OsAffx.28036.1.S1_at11/116+24636133..24636820hypothetical protein
LOC_Os06g41180Os.49232.1.S1_x_at1/116+24636133..24636820hypothetical protein
LOC_Os06g41190NANA6+24650254..24651537retrotransposon protein, putative, unclassified
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28036.1.S1_at--1080--338Chr10:20285018..20285042 (25 bp)
ATAACAAGTGCAACCACATGGTGGT
NONE
OsAffx.28036.1.S1_at--1134--8115Chr10:20285046..20285108 (25 bp)
GGACACCCTGGCTAAAGGCGGAAAG
NONE
OsAffx.28036.1.S1_at--1063--3333Chr10:20285049..20285111 (25 bp)
CACCCTGGCTAAAGGCGGAAAGCCG
NONE
OsAffx.28036.1.S1_at--169--6957Chr10:20285122..20285146 (25 bp)
GTAGAGGCATCCTGGGAGTCCGAAA
NONE
OsAffx.28036.1.S1_at--686--6197Chr10:20285125..20285149 (25 bp)
GAGGCATCCTGGGAGTCCGAAACAG
NONE
OsAffx.28036.1.S1_at--745--4976Chr10:20285128..20285152 (25 bp)
GCATCCTGGGAGTCCGAAACAGAGG
NONE
OsAffx.28036.1.S1_at--223--9276Chr10:20285131..20285155 (25 bp)
TCCTGGGAGTCCGAAACAGAGGAAG
NONE
OsAffx.28036.1.S1_at--1031--5555Chr10:20285104..20285199 (25 bp)
GAAAGCCGGAGTTGGCCCGATGTTG
NONE
OsAffx.28036.1.S1_at--1103--4535Chr10:20285189..20285213 (25 bp)
GCCCGATGTTGGTCAGGGAGACCCT
NONE
OsAffx.28036.1.S1_at--697--4057Chr10:20285192..20285216 (25 bp)
CGATGTTGGTCAGGGAGACCCTCTA
NONE
OsAffx.28036.1.S1_at--252--1077Chr10:20285203..20285227 (25 bp)
AGGGAGACCCTCTATGTGGCATGAG
NONE
Target Sequence 
ATAACAAGTGCAACCACATGGTGGTATGGGACACCCTGGCTAAAGGCGGAAAGCCGGGATGTGGGGGTAGAGGCATCCTG
GGAGTCCGAAACAGAGGAAGGCANCCGGGAGTCCTAAAAGGAAAGCCGGAGTTGGCCCGATGTTGGTCAGGGAGACCCTC
TATGTGGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis