Browse Element(s) Details


OsAffx.28035.1.S1_at

Description tigr:9634.m03958
TID=OsAffx.28035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4116011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41140NANA6+24602659..24603334hypothetical protein
LOC_Os06g41150OsAffx.28034.1.S1_at11/116+24624709..24625739hypothetical protein
LOC_Os06g41160OsAffx.28035.1.S1_at11/116+24626695..24627654hypothetical protein
LOC_Os06g41170NANA6+24634716..24635111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g41180OsAffx.28036.1.S1_at11/116+24636133..24636820hypothetical protein
LOC_Os06g41180Os.49232.1.S1_x_at1/116+24636133..24636820hypothetical protein
LOC_Os06g41190NANA6+24650254..24651537retrotransposon protein, putative, unclassified
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28035.1.S1_at--419--5011Chr06:24627096..24627120 (25 bp)
GCAGTCTCGTCCAGATCCGGAGGGA
LOC_Os06g41160
OsAffx.28035.1.S1_at--826--3631Chr06:24627141..24627165 (25 bp)
CTTCCTTGCTGCCACATGGAGATTG
LOC_Os06g41160
OsAffx.28035.1.S1_at--365--2111Chr06:24627169..24627193 (25 bp)
ACATGTGCTGGTTGGCTACAAGAAC
LOC_Os06g41160
OsAffx.28035.1.S1_at--372--8491Chr06:24627181..24627205 (25 bp)
TGGCTACAAGAACCATCTTCTCCGA
LOC_Os06g41160
OsAffx.28035.1.S1_at--501--2731Chr06:24627210..24627234 (25 bp)
AAGAACCTCACTGCCGACTAGGTTG
LOC_Os06g41160
OsAffx.28035.1.S1_at--651--1911Chr06:24627241..24627265 (25 bp)
ACGTGTGCGGCTACACTGGTGTTTC
LOC_Os06g41160
OsAffx.28035.1.S1_at--1073--1951Chr06:24627255..24627279 (25 bp)
ACTGGTGTTTCCTATGTGCTGCTCC
LOC_Os06g41160
OsAffx.28035.1.S1_at--75--7831Chr06:24627300..24627324 (25 bp)
GGTCAGCGACATCGTGGATTACCTC
LOC_Os06g41160
OsAffx.28035.1.S1_at--855--9351Chr06:24627329..24627353 (25 bp)
TCGAGCTCGAGTTGCTATCCGACAT
LOC_Os06g41160
OsAffx.28035.1.S1_at--964--4411Chr06:24627498..24627522 (25 bp)
GCCAGCATCGCCAAAATGTCATACA
LOC_Os06g41160
OsAffx.28035.1.S1_at--1065--751Chr06:24627513..24627537 (25 bp)
ATGTCATACACGCTCTAGCGACGAC
LOC_Os06g41160
Target Sequence 
GCAGTCTCGTCCAGATCCGGAGGGAGAGAGCAGCCCCACCGTCGCCTTCCTTGCTGCCACATGGAGATTGGAAACATGTG
CTGGTTGGCTACAAGAACCATCTTCTCCGACCCCAAGAACCTCACTGCCGACTAGGTTGGCCTTGACGTGTGCGGCTACA
CTGGTGTTTCCTATGTGCTGCTCCCCGACAACTGCGGCTGGGAAGGTCAGCGACATCGTGGATTACCTCCCCGTCGAGCT
CGAGTTGCTATCCGACATCGCGCTGCTCCACCTCAACTCCACCCGCTTCTGCCACCCTCCACTGCCTCCACGAGCTCGAC
CACAGCAACAACCGCCTCGTCCGCCACTTCCGCACCATTGTGCTCGACTTCCTCTACAACAACTTCAAGGGCGCCATCCC
GCGCCAGCATCGCCAAAATGTCATACACGCTCTAGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis