Browse Element(s) Details


Os.44171.1.S1_at

Description gb:AK120959.1
DB_XREF= gi:37990582
TID=Os.44171.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) short-root protein-like (OJ1113_E01.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039J21, full insert sequence.
FL= gb:AK120959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3982011/11short-root transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed
LOC_Os07g39810Os.44172.1.S1_at11/117+23849890..23850754lipase class 3 family protein, putative, expressed
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44171.1.S1_at--124--4031Chr07:23868868..23868892 (25 bp)
CGTCTTCCTCGCGTGGAAGGAGCAG
LOC_Os07g39820
Os.44171.1.S1_at--1092--3911Chr07:23868917..23868941 (25 bp)
CGGCCATGATCGGATCGTCGTGATC
LOC_Os07g39820
Os.44171.1.S1_at--1079--511Chr07:23868939..23868963 (25 bp)
ATCGATGGATCAAAGCTCACCGGTG
LOC_Os07g39820
Os.44171.1.S1_at--1132--3351Chr07:23868956..23868980 (25 bp)
CACCGGTGAGTGGAACAGCATGGAA
LOC_Os07g39820
Os.44171.1.S1_at--948--5511Chr07:23868981..23869005 (25 bp)
GAAAAGAGCTCCATAGCTAAGCAAG
LOC_Os07g39820
Os.44171.1.S1_at--572--2731Chr07:23868999..23869023 (25 bp)
AAGCAAGCACGCATGCATATCCACC
LOC_Os07g39820
Os.44171.1.S1_at--880--9791Chr07:23869034..23869058 (25 bp)
TAAGCTAGCAAGCTCTCTCGTGTGT
LOC_Os07g39820
Os.44171.1.S1_at--11--3771Chr07:23869048..23869072 (25 bp)
CTCTCGTGTGTGTCACGATCGACAT
LOC_Os07g39820
Os.44171.1.S1_at--102--1791Chr07:23869125..23869149 (25 bp)
ACAGAAATGGATCACGTACGTACGT
LOC_Os07g39820
Os.44171.1.S1_at--71--6811Chr07:23869187..23869211 (25 bp)
GTTTTAGTTCCTAGATTTGCATCCA
LOC_Os07g39820
Os.44171.1.S1_at--677--4311Chr07:23869209..23869233 (25 bp)
CCATTTTTATTCATCGATCGCCAAC
LOC_Os07g39820
Target Sequence 
CGTCTTCCTCGCGTGGAAGGAGCAGCCTCTGGTGTGGGCAAGCGCGTGGCGGCCATGATCGGATCGTCGTGATCGATGGA
TCAAAGCTCACCGGTGAGTGGAACAGCATGGAAGAAAAGAGCTCCATAGCTAAGCAAGCACGCATGCATATCCACCATGC
ATGGGGTAAGCTAGCAAGCTCTCTCGTGTGTGTCACGATCGACATTAANGGCGGCTCACACANAGGCATGTAGGGTTTTG
AAACAGCGTAGGNAGCTACAGAAATGGATCACGTACGTACGTACACATNGGGTTGCAGCGATCGAGGAGGGAGATGATAG
TTTTAGTTCCTAGATTTGCATCCATTTTTATTCATCGATCGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis