Browse Element(s) Details


Os.38056.1.S1_at

Description gb:AK102792.1
DB_XREF= gi:32988001
TID=Os.38056.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription repressor HOTR (OJ1113_E01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107P15, full insert sequence.
FL= gb:AK102792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3980010/11Transcription repressor HOTR, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed
LOC_Os07g39810Os.44172.1.S1_at11/117+23849890..23850754lipase class 3 family protein, putative, expressed
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38056.1.S1_at--703--2771Chr07:23841439..23841463 (25 bp)
AAGAGAATCAGCCTTCCGGAAGAAT
LOC_Os07g39800
Os.38056.1.S1_at--793--1491Chr07:23841380..23841404 (25 bp)
AGCACACTGTCATCCAAAGGCCAGG
LOC_Os07g39800
Os.38056.1.S1_at--437--3491Chr07:23841337..23841361 (25 bp)
CAGGCAATGTCGCAGCTATCTGTGA
LOC_Os07g39800
Os.38056.1.S1_at--767--4871Chr07:23841323..23841347 (25 bp)
GCTATCTGTGAAGCGTTGACGGACA
LOC_Os07g39800
Os.38056.1.S1_at--225--2131Chr07:23841298..23841322 (25 bp)
ACAGATGCCGTGAAACAATACCAAT
LOC_Os07g39800
Os.38056.1.S1_at--987--1111Chr07:23841051..23841075 (25 bp)
AGTGATGCTCAATTGCTTACGTTCA
LOC_Os07g39800
Os.38056.1.S1_at--1049--4891Chr07:23841037..23841061 (25 bp)
GCTTACGTTCATTCAGTCATTTGTT
LOC_Os07g39800
Os.38056.1.S1_at--325--2751Chr07:23840979..23841003 (25 bp)
AAGAAAGCTGTTTTCTTGCCCCGAG
LOC_Os07g39800
Os.38056.1.S1_at--682--9571Chr07:23840966..23840990 (25 bp)
TCTTGCCCCGAGTTTTGATTGGTTA
LOC_Os07g39800
Os.38056.1.S1_at--263--8831Chr07:23840951..23840975 (25 bp)
TGATTGGTTATTCGTTGCTGCTTGT
LOC_Os07g39800
Os.38056.1.S1_at--939--10431NONE
TTAGGGACTCAACCTCTATTACCCG
NONE
Target Sequence 
AAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGAATCCTACCAGCACACTGTCATCCAAAGGC
CAGGGACGTCAGAAAAGAGTGACAGGCAATGTCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAAT
ACCAATGGCAGGAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGTTTTCCGGAA
GCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATNGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAG
AGATGCGCGATGCATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAA
TTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGTTTTCTTGCC
CCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTCAAACAAACCATGTAACTTGATACAACTTT
TTTTAGGGACTCAACCTCTATTACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis