Browse Element(s) Details


Os.34438.1.S1_x_at

Description gb:AK071404.1
DB_XREF= gi:32981427
TID=Os.34438.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU172828(E31314),C74435(E31314)~similar to nodulin (OJ1113_E01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full insert sequence.
FL= gb:AK071404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3974011/11Esterase precursor, putative, expressed
LOC_Os07g397501/11Esterase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34438.1.S1_x_at--96--10571Chr07:23813151..23813175 (25 bp)
TTCTTCAACGCGAGGCTGCGCGAGA
LOC_Os07g39740
Os.34438.1.S1_x_at--378--9372Chr07:23813078..23813102 (25 bp)
TCGACGTCTACTCCGCCAAGTACAG
LOC_Os07g39740
Os.34438.1.S1_x_at--837--2831Chr07:23813061..23813085 (25 bp)
AAGTACAGGCTCATCAGCCAGGCCA
LOC_Os07g39740
Os.34438.1.S1_x_at--67--9671Chr07:23813051..23813072 (22 bp)
TCAGCCAGGCCAAGCAGCTCGGATT
LOC_Os07g39740
Os.34438.1.S1_x_at--1055--2511Chr07:23812887..23812911 (25 bp)
AACTTCGACAGGGACATCCGGTGCG
LOC_Os07g39740
Os.34438.1.S1_x_at--153--2851Chr07:23812821..23812845 (25 bp)
AAGTCGTGCGACGACCCGTCGAGGA
LOC_Os07g39740
Os.34438.1.S1_x_at--553--1011Chr07:23812755..23812779 (25 bp)
AGGTTCGTCTTCGAGCTGATCGTCG
LOC_Os07g39740
Os.34438.1.S1_x_at--584--8371Chr07:23812670..23812694 (25 bp)
GGCGATGAGCTCTACTGTTTTCCCG
LOC_Os07g39740
Os.34438.1.S1_x_at--357--1951Chr07:23812657..23812681 (25 bp)
ACTGTTTTCCCGGTGCAATGCAAGG
LOC_Os07g39740
Os.34438.1.S1_x_at--1146--2931Chr07:23812636..23812660 (25 bp)
AAGGCTGTTGCATAGCACTTCACGT
LOC_Os07g39740
Os.34438.1.S1_x_at--957--3311Chr07:23812621..23812645 (25 bp)
CACTTCACGTGCAGATTGGTAATAA
LOC_Os07g39740
Target Sequence 
TTCTTCAACGCGAGGCTGCGCGAGACCGTGGACCGGCTAAGGGCGGCGCTCCCGGACGCCGCGCTCACCTACGTCGACGT
CTACTCCGCCAAGTACAGGCTCATCAGCCAGGCCAAGCAGCTCGGATTCGGGGACCCGCTGCTGGTGTGCTGCGGGTACG
GCGGCGGCGAGTACAACTTCGACAGGGACATCCGGTGCGGCGGGAAGGTGGAGGTGAACGGCACGTCGGTGCTGGCGGGG
AAGTCGTGCGACGACCCGTCGAGGAGCGTGAGCTGGGACGGGGTGCACTTCACGGAGGCGGCGAACAGGTTCGTCTTCGA
GCTGATCGTCGGCGGCAAGCTCTCCGACCCGCCGGTGCCGCTCAGGCAGGCGTGCCGCCGGGGCGGCGGAGGGCGATGAG
CTCTACTGTTTTCCCGGTGCAATGCAAGGCTGTTGCATAGCACTTCACGTGCAGATTGGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34438.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis