Browse Element(s) Details


OsAffx.28828.1.S1_at

Description gb:NM_187020.1
DB_XREF= gi:34901125
GEN=OJ1113_E01.7
TID=OsAffx.28828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1113_E01.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g397703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed
LOC_Os07g39810Os.44172.1.S1_at11/117+23849890..23850754lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28828.1.S1_at--43--3731Chr07:23824203..23824227 (25 bp)
CTACCGTGAAGCTTATGGTGTTGAT
NONE
OsAffx.28828.1.S1_at--841--811Chr07:23824217..23824241 (25 bp)
ATGGTGTTGATGCTTCGCTGCTTGC
NONE
OsAffx.28828.1.S1_at--992--9191Chr07:23824531..23824555 (25 bp)
TGCCACATTAGCTAAAACCGGACAT
NONE
OsAffx.28828.1.S1_at--828--2971Chr07:23824559..23824583 (25 bp)
AATGTTTTGGGATCTCAAGTGCACC
NONE
OsAffx.28828.1.S1_at--1025--111Chr07:23824969..23824990 (22 bp)
ATTCTTCTCTGTCTGAGGATCTGCA
NONE
OsAffx.28828.1.S1_at--505--5171Chr07:23824988..23825012 (25 bp)
GCAAGAAGCTATCAGCAACCGCGCT
NONE
OsAffx.28828.1.S1_at--1107--2611Chr07:23825004..23825028 (25 bp)
AACCGCGCTGGTAGGGAGATCATGA
NONE
OsAffx.28828.1.S1_at--1037--711Chr07:23825025..23825049 (25 bp)
ATGATTGTGATCTGCGGTCTTACCA
NONE
OsAffx.28828.1.S1_at--696--5311Chr07:23825226..23825250 (25 bp)
GAAGGTACTGGAACTACATGTGTTT
LOC_Os07g39770
OsAffx.28828.1.S1_at--685--3731Chr07:23825239..23825263 (25 bp)
CTACATGTGTTTGGCAAGTTGCGAA
LOC_Os07g39770
OsAffx.28828.1.S1_at--1119--3511Chr07:23825319..23825422 (25 bp)
CATCGCAATGGAGGAAGCACCTGAT
LOC_Os07g39770
Target Sequence 
CTACCGTGAAGCTTATGGTGTTGATGCTTCGCTGCTTGCTGCCTCATATCCCCTCTCTCCCCATGCCATGGTGGCAATCG
AGGAGGCCATAGGGGGAGAGTGCCACGTTGATGCCACATTAGCTAAAACCGGACATAATAATGTTTTGGGATCTCAAGTG
CACCAGTATTCTTCTCTGTCTGAGGATCTGCAAGAAGCTATCAGCAACCGCGCTGGTAGGGAGATCATGATTGTGATCTG
CGGTCTTACCAAGTTACAAGATGTTGCGAAGTTATGTGATGTTCCAATCGAATCAAGGAAGGTACTGGAACTACATGTGT
TTGGCAAGTTGCGAAGAGAGAGTAAGGTGCCTGGACTATGGGAATTGGTTGGTGTAGATGAGGCCATGGCCATCGCAATG
GAGGAAGCACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis