Browse Element(s) Details


Os.47746.1.A1_at

Description gb:AK069212.1
DB_XREF= gi:32979236
TID=Os.47746.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012B09, full insert sequence.
FL= gb:AK069212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3973011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47746.1.A1_at--1036--7131Chr07:23807414..23807438 (25 bp)
GTCTTTCTGAATTAGGTATTGCGTA
LOC_Os07g39730
Os.47746.1.A1_at--1060--6791Chr07:23807389..23807413 (25 bp)
GTTATTACTATTAGCCTATGTCCTG
LOC_Os07g39730
Os.47746.1.A1_at--775--9971Chr07:23807378..23807402 (25 bp)
TAGCCTATGTCCTGGTTGATTCCCA
LOC_Os07g39730
Os.47746.1.A1_at--280--7911Chr07:23807365..23807389 (25 bp)
GGTTGATTCCCAGAGATCATCACAA
LOC_Os07g39730
Os.47746.1.A1_at--768--6431Chr07:23807351..23807375 (25 bp)
GATCATCACAACACAGTCTTGCTTG
LOC_Os07g39730
Os.47746.1.A1_at--219--2191Chr07:23807341..23807365 (25 bp)
ACACAGTCTTGCTTGTGATTTGTAA
LOC_Os07g39730
Os.47746.1.A1_at--997--8271Chr07:23807300..23807324 (25 bp)
GGCATCTCAATGTATGCTCATTCAT
LOC_Os07g39730
Os.47746.1.A1_at--917--5971Chr07:23807243..23807267 (25 bp)
GAGAAATTGCAATGGCTAAGATCAG
LOC_Os07g39730
Os.47746.1.A1_at--1069--4831Chr07:23807229..23807253 (25 bp)
GCTAAGATCAGCCTAAGCCTGCAAA
LOC_Os07g39730
Os.47746.1.A1_at--930--4451Chr07:23807219..23807243 (25 bp)
GCCTAAGCCTGCAAATTCTAAGCAT
LOC_Os07g39730
Os.47746.1.A1_at--665--2231Chr07:23807207..23807231 (25 bp)
AAATTCTAAGCATAACTGTTTGTAT
LOC_Os07g39730
Target Sequence 
GTCTTTCTGAATTAGGTATTGCGTAGTTATTACTATTAGCCTATGTCCTGGTTGATTCCCAGAGATCATCACAACACAGT
CTTGCTTGTGATTTGTAAAAGAATTTGCACTNTTGGCATCTCAATGTATGCTCATTCATNGTTCAATCACANACTCACAA
TTTTGCTGAATGAGAAATTGCAATGGCTAAGATCAGCCTAAGCCTGCAAATTCTAAGCATAACTGTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47746.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis