Browse Element(s) Details


OsAffx.22377.1.S1_s_at

Description gb:NM_187019.1
DB_XREF= gi:34901123
GEN=OJ1113_E01.6
TID=OsAffx.22377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1113_E01.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3976011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22377.1.S1_s_at--158--3151Chr07:23823420..23823444 (25 bp)
AATTCCGACGCAGATGAGGACGGCA
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--160--9151Chr07:23823382..23823406 (25 bp)
TGCGATCGCAGAAGGATGTGACGTC
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--1026--7651Chr07:23823352..23823376 (25 bp)
GGGATGTGATGATGACGCCTCTATC
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--624--6311Chr07:23823342..23823366 (25 bp)
GATGACGCCTCTATCATAAGGGAGA
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--1064--9771Chr07:23823326..23823350 (25 bp)
TAAGGGAGAGCATGATCACCACCAT
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--1008--4171Chr07:23823282..23823306 (25 bp)
CCCAAATCGCCGGAGAATGATGATG
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--404--712Chr10:5784017..5784036 (20 bp)
ATGATGATGGCTTCACATCGGCATC
NONE
OsAffx.22377.1.S1_s_at--1018--2092Chr10:5784026..5784050 (25 bp)
ACATCGGCATCACCGGCGGAAGCTG
NONE
OsAffx.22377.1.S1_s_at--400--2691Chr07:23823233..23823257 (25 bp)
AAGCTGCATCCGCTTCTGGATTTGA
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--229--10611Chr07:23823220..23823244 (25 bp)
TTCTGGATTTGACCGGATCAGTGTT
LOC_Os07g39760
OsAffx.22377.1.S1_s_at--681--8811Chr07:23823199..23823223 (25 bp)
TGTTGAGAGCGGTATGCGTCCACCT
LOC_Os07g39760
Target Sequence 
AATTCCGACGCAGATGAGGACGGCAAGCCGGAGAGCGGTGCGATCGCAGAAGGATGTGACGTCGATAGGGGATGTGATGA
TGACGCCTCTATCATAAGGGAGAGCATGATCACCACCATGGTGAATGGTGAGGGGAACCCCAAATCGCCGGAGAATGATG
ATGGCTTCACATCGGCATCACCGGCGGAAGCTGCATCCGCTTCTGGATTTGACCGGATCAGTGTTGAGAGCGGTATGCGT
CCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22377.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis