Browse Element(s) Details


OsAffx.9169.1.S1_at

Description gb:NM_192598.1
DB_XREF= gi:34912279
GEN=P0710A02.21
TID=OsAffx.9169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0710A02.21 (P0710A02.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g410002/11hypothetical protein
LOC_Os04g442241/11hypothetical protein
LOC_Os07g397301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9169.1.S1_at--425--7612Chr07:23810089..23810242 (25 bp)
GGGCAATGAAGAAGGAATCCTGTGA
LOC_Os07g39730
OsAffx.9169.1.S1_at--126--7831Chr01:23541476..23541500 (25 bp)
GGTCACACACACTATCATCGAAAGC
LOC_Os01g41000
OsAffx.9169.1.S1_at--268--10171Chr01:23541464..23541488 (25 bp)
TATCATCGAAAGCTGCTAGGCCAAA
NONE
OsAffx.9169.1.S1_at--686--1571Chr01:23541454..23541478 (25 bp)
AGCTGCTAGGCCAAACAAGGCCAAA
NONE
OsAffx.9169.1.S1_at--516--2951Chr01:23541438..23541462 (25 bp)
AAGGCCAAACAACGAGCGCCCGCTG
NONE
OsAffx.9169.1.S1_at--1021--9351Chr01:23541348..23541372 (25 bp)
TCGAACGGCCGCTCGTAGCTGGCCG
NONE
OsAffx.9169.1.S1_at--153--1791Chr01:23541315..23541339 (25 bp)
ACCGAAACGGGTGCTCGTCATCAAT
NONE
OsAffx.9169.1.S1_at--145--4111Chr01:23541313..23541337 (25 bp)
CGAAACGGGTGCTCGTCATCAATGG
NONE
OsAffx.9169.1.S1_at--389--10491Chr01:23540778..23540802 (25 bp)
TTCAAGGGCGTAAATCGGATTCGGT
NONE
OsAffx.9169.1.S1_at--277--1393Chr09:9820859..9820878 (20 bp)
AGACCTCAGATGAACATATTCTCTT
NONE
OsAffx.9169.1.S1_at--1118--8951Chr01:23540732..23540756 (25 bp)
TGAACATATTCTCTTTGGAAACAGA
NONE
Target Sequence 
GGGCAATGAAGAAGGAATCCTGTGAGGAAGATAGCGAAAAGGCCAGACACAATTCTTGTCCGTGGTGTGCCATCCAGGTG
GTTTGCGGAGACGAGGATATCATCGAAAGCCTCCACACTGGTCACACACACTATCATCGAAAGCTGCTAGGCCAAACAAG
GCCAAACAACGAGCGCCCGCTGCCCGCCGCCGTCGAGCCCCCATCCACCGCGTGCCTCTCCCGCCGACCTCCGCTAGCCT
CTCCCGCTCGAACGGCCGCTCGTAGCTGGCCGCCTCTCCCACCGAAACGGGTGCTCGTCATCAATGGGGAGAGGTGTGAT
GGTGTTGGTGGGTTCAAGGGCGTAAATCGGATTCGGTGTAAAATTAAGAGACCTCAGATGAACATATTCTCTTTGGAAAC
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis