Browse Element(s) Details


Os.35080.1.S1_at

Description gb:AK069058.1
DB_XREF= gi:32979082
TID=Os.35080.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.3 (P0451D05.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I01, full insert sequence.
FL= gb:AK069058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4104011/11Protein SYS1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35080.1.S1_at--373--3272Chr04:28863061..28863324 (25 bp)
CAACTATTCAAGTCTTCTCTTCTCT
NONE
Os.35080.1.S1_at--341--6931Chr01:23570340..23570364 (25 bp)
GTATGGCTAGATACCAGCACCTTGA
LOC_Os01g41040
Os.35080.1.S1_at--338--9991Chr01:23570378..23570402 (25 bp)
TAGCGAGGGTCTGTATCGCACCATT
LOC_Os01g41040
Os.35080.1.S1_at--58--5091Chr01:23570395..23570419 (25 bp)
GCACCATTCGATTCTTCTTTAGCTT
LOC_Os01g41040
Os.35080.1.S1_at--563--3111Chr01:23570432..23570456 (25 bp)
AATATATCCAGTTTCCAGTGCTTCC
LOC_Os01g41040
Os.35080.1.S1_at--33--1531Chr01:23570472..23570496 (25 bp)
AGCAGAGTTCAGTTTGGCGGCCAAT
LOC_Os01g41040
Os.35080.1.S1_at--323--4711Chr01:23570488..23570512 (25 bp)
GCGGCCAATCACATGACTACTCGAA
LOC_Os01g41040
Os.35080.1.S1_at--1012--3291Chr01:23570517..23570541 (25 bp)
CAAATCATGCTGTCCTTCTGAACAT
LOC_Os01g41040
Os.35080.1.S1_at--725--9231Chr01:23570631..23570655 (25 bp)
TCCATCGCAGGTGAACTCGGGCAAA
LOC_Os01g41040
Os.35080.1.S1_at--784--9811Chr01:23570661..23570685 (25 bp)
TAAAATCCCTTGTGGGTTCGCACTT
LOC_Os01g41040
Os.35080.1.S1_at--1047--3271Chr01:23570794..23570818 (25 bp)
CAAAATCACTTCTTTCTCTTCTCTT
LOC_Os01g41040
Target Sequence 
CAACTATTCAAGTCTTCTCTTCTCTATGGATAGTCTCATTGAATTGACGAAAAAAGAGATTACTTGACAATTTGTATGGC
TAGATACCAGCACCTTGAAACCTGTGTTCTTTAGCGAGGGTCTGTATCGCACCATTCGATTCTTCTTTAGCTTTATCCTG
CAGATAATATATCCAGTTTCCAGTGCTTCCTCTTAAGCTCATTCCAGCAGAGTTCAGTTTGGCGGCCAATCACATGACTA
CTCGAACCTCCAAATCATGCTGTCCTTCTGAACATGTATGTCAATATNTGTGCCNTGTGTGTATTGCGTCAGAGGTGTTG
ACATGAGTTGGTTAAAAATACATGCTTGATACGAAATTGTAATTTCCATCGCAGGTGAACTCGGGCAAAAATTTTAAAAT
CCCTTGTGGGTTCGCACTTTTTTTTNCCTCTAGTGCTGTGATACTTGCAGTAGTTTGTTTTATCCTTGCTAAGTATTGTG
ATATTGTCAGTACTACAGAAGCGCCTGTAATCTCAGGTGTCAAAACCCAAAATCACTTCTTTCTCTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis