Browse Element(s) Details


Os.27925.2.A1_at

Description gb:CB966465
DB_XREF= gi:30228574
DB_XREF=NL37_H08
CLONE=NL37_H08
TID=Os.27925.2
CNT=7
FEA=EST
TIER=Stack
STK=7
UG=Os.27925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C05, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g410501/11sulfate transporter 3.5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27925.2.A1_at--942--3991Chr03:30031314..30031338 (25 bp)
CGTTAATTATTGATTCCTAGGTCTC
NONE
Os.27925.2.A1_at--388--3071Chr03:30031377..30031401 (25 bp)
AATCAAGAAACGAAGCCATACATAG
NONE
Os.27925.2.A1_at--957--2651Chr03:30031389..30031413 (25 bp)
AAGCCATACATAGCTCTCGTGCTCT
NONE
Os.27925.2.A1_at--754--9991Chr03:30031399..30031423 (25 bp)
TAGCTCTCGTGCTCTCATTCGAGAA
NONE
Os.27925.2.A1_at--144--91NONE
ATTCGAGAACAATCTTGGCGCCGAT
NONE
Os.27925.2.A1_at--195--3071NONE
AATCTTGGCGCCGATAGCTCGCATC
NONE
Os.27925.2.A1_at--716--6492Chr03:30031438..30031461 (24 bp)
GATAGCTCGCATCTTCTCGGCGATG
NONE
Os.27925.2.A1_at--598--10711Chr03:30031534..30031558 (25 bp)
TTGAGGCCCAGATTCGTGAACGCCC
NONE
Os.27925.2.A1_at--813--9391Chr03:30031547..30031571 (25 bp)
TCGTGAACGCCCTCAGCTCTTTGAT
NONE
Os.27925.2.A1_at--543--3672Chr03:30031565..30031589 (25 bp)
CTTTGATGATCTTGAGCTTCGCGGC
NONE
Os.27925.2.A1_at--109--1551Chr03:30031606..30031630 (25 bp)
AGCTTCACGTCGAACGCCATCTTCT
NONE
Target Sequence 
CGTTAATTATTGATTCCTAGGTCTCNAAATTCTCTCTTNTACTTCATACAAGAAACAGAAACAAATCAAGAAACGAAGCC
ATACATAGCTCTCGTGCTCTCATTCGAGAACAATCTTGGCGCCGATAGCTCGCATCTTCTCGGCGATGCTCTCCGCCTCC
TCCTTGGGGACTCCCGCCTTCAGCACGGCCGGCGCCTTCTCCACGAGCTCCTTCGCCTCCTTGAGGCCCAGATTCGTGAA
CGCCCTCAGCTCTTTGATGATCTTGAGCTTCGCGGCGGCGTCGAAGCCCTCCAGCTTCACGTCGAACGCCATCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27925.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis