Browse Element(s) Details


OsAffx.11417.1.S1_at

Description tigr:9629.m03922
TID=OsAffx.11417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 19658-19089
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4104011/11Protein SYS1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11417.1.S1_at--441--6891Chr01:23567360..23567384 (25 bp)
GTATATCTGCTTGGTACCTGCTGAA
LOC_Os01g41040
OsAffx.11417.1.S1_at--383--1091Chr01:23567415..23567652 (25 bp)
AGGGCCAACAAGTTTCATTCTCCAA
LOC_Os01g41040
OsAffx.11417.1.S1_at--820--331Chr01:23567653..23567677 (25 bp)
ATCACCCTAGGACAGCTTATAACAG
LOC_Os01g41040
OsAffx.11417.1.S1_at--974--5951Chr01:23567677..23567701 (25 bp)
GAGAACGGGAACTATACCTCCACTT
LOC_Os01g41040
OsAffx.11417.1.S1_at--1060--9191Chr01:23567695..23567719 (25 bp)
TCCACTTTCTAATTCTACCAGCATT
LOC_Os01g41040
OsAffx.11417.1.S1_at--851--9971Chr01:23567710..23567734 (25 bp)
TACCAGCATTCATTACAGATCGCAG
LOC_Os01g41040
OsAffx.11417.1.S1_at--961--10331Chr01:23567737..23567761 (25 bp)
TTTACTACCCACATATTACGCACTA
LOC_Os01g41040
OsAffx.11417.1.S1_at--866--131Chr01:23567776..23567800 (25 bp)
ATTACTGCAATCTAAGAGGCCCTGT
LOC_Os01g41040
OsAffx.11417.1.S1_at--780--8651Chr01:23567798..23567822 (25 bp)
TGTGGAAAACAACTCCCTTTTGCCT
LOC_Os01g41040
OsAffx.11417.1.S1_at--799--9811Chr01:23568018..23568039 (22 bp)
TAACAGTGCTGCTTTCATGCTTTAT
LOC_Os01g41040
OsAffx.11417.1.S1_at--220--10131Chr01:23568609..23568633 (25 bp)
TATGCTGTTGACTGATTGGGACTAT
LOC_Os01g41040
Target Sequence 
GTATATCTGCTTGGTACCTGCTGAAATTTTACACCCAAATCTTCCATTTAATATGAGGGCCAACAAGTTTCATTCTCCAA
ATCACCCTAGGACAGCTTATAACAGAGAACGGGAACTATACCTCCACTTTCTAATTCTACCAGCATTCATTACAGATCGC
AGAATTTACTACCCACATATTACGCACTATTACACATTTGGTGATTACTGCAATCTAAGAGGCCCTGTGGAAAACAACTC
CCTTTTGCCTAATTTCTTCATGCATTTTAACAGTGCTGCTTTCATGCTTTATGTGATTGAGAGAGCTAAGAAGTGCCTGG
ACTTTGCAGCCACCCTCTACATCATTCATCTGTTTATTTGCATTGTTTATGGTGGATGGCCAGCTTCAGTTACATGGTGG
GTTGTTAATATTGCTGGTTTGGCGATTATGTCTCTTCTTGGTGAATACCTATGTATAAGGCGGGAATTAAAAGAAATTCC
AATATCACGGCTTCGTGCAAGTGTATTTATGCTGTTGACTGATTGGGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis