Browse Element(s) Details


OsAffx.29576.1.S1_at

Description gb:NM_192602.1
DB_XREF= gi:34912287
GEN=P0451D05.4
TID=OsAffx.29576.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative sulfate transporter (P0451D05.4), mRNA.
PROD=putative sulfate transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4105011/11sulfate transporter 3.5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29576.1.S1_at--671--9091Chr01:23576697..23576721 (25 bp)
TGCTCAGGGCGCTCCTGCACGTGGC
LOC_Os01g41050
OsAffx.29576.1.S1_at--658--4091Chr01:23576730..23576754 (25 bp)
CGACGAGCAAGCTCGGCCGCGTGTC
LOC_Os01g41050
OsAffx.29576.1.S1_at--43--1831Chr01:23576790..23576814 (25 bp)
ACGCCTTCTGCGACGTCGCGCAGTA
LOC_Os01g41050
OsAffx.29576.1.S1_at--757--7791Chr01:23576869..23576893 (25 bp)
GGTCTGCTTCGCCAACGCCGAGTAC
LOC_Os01g41050
OsAffx.29576.1.S1_at--118--1191Chr01:23576889..23576913 (25 bp)
AGTACCTCCGGGAGAGGATCGCGCG
LOC_Os01g41050
OsAffx.29576.1.S1_at--165--971Chr01:23576949..23576973 (25 bp)
AGGACCTGCTCTACGTCGTCCTCGA
LOC_Os01g41050
OsAffx.29576.1.S1_at--960--1931Chr01:23576987..23577011 (25 bp)
ACGGCGATCGACAGCCCCGGGATCG
LOC_Os01g41050
OsAffx.29576.1.S1_at--506--2151Chr01:23576997..23577021 (25 bp)
ACAGCCCCGGGATCGAGATGCTGCG
LOC_Os01g41050
OsAffx.29576.1.S1_at--526--9411Chr01:23577123..23577147 (25 bp)
TCGTCGGCGAGAGCTGGATGTTCCT
LOC_Os01g41050
OsAffx.29576.1.S1_at--774--1371Chr01:23577132..23577156 (25 bp)
AGAGCTGGATGTTCCTCTCCAATGG
LOC_Os01g41050
OsAffx.29576.1.S1_at--885--4711Chr01:23577135..23577159 (25 bp)
GCTGGATGTTCCTCTCCAATGGCGA
LOC_Os01g41050
Target Sequence 
TGCTCAGGGCGCTCCTGCACGTGGCGCGCCCGTCGACGAGCAAGCTCGGCCGCGTGTCCTGCGGCTCCGGTGCCGGCGCC
GCCGACGACGACCACGCCTTCTGCGACGTCGCGCAGTACCCCGGCGCGGCGACCGCGCCCAGCATTCTCGTCCTCCAGGT
CGCCGGCTCGCCGGTCTGCTTCGCCAACGCCGAGTACCTCCGGGAGAGGATCGCGCGGTGGGTGGAGGACGAGGAGAAGG
CCGTCGCCGGCGAGGACCTGCTCTACGTCGTCCTCGACATCGGCGGCGTGACGGCGATCGACAGCCCCGGGATCGAGATG
CTGCGGGAGGTGCACGGCGAGCTGGAGAGGAAGGGGATGAAGATGGCGGTGACGAACCCGAGGATGGCGGTGGCGGAGAA
GCTGGTGCTGTCCGGGCTCGCGGAGCTCGTCGGCGAGAGCTGGATGTTCCTCTCCAATGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis