Browse Element(s) Details


OsAffx.28827.1.S1_at

Description gb:NM_187015.1
DB_XREF= gi:34901115
GEN=OJ1060_D03.28
TID=OsAffx.28827.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1060_D03.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3972011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28827.1.S1_at--827--5571Chr07:23806052..23806076 (25 bp)
GAAAGGGTGGGTGCCCATCGTCGTC
LOC_Os07g39720
OsAffx.28827.1.S1_at--690--9411Chr07:23806069..23806093 (25 bp)
TCGTCGTCAAGCTCCCGCCTGAGGA
LOC_Os07g39720
OsAffx.28827.1.S1_at--239--4531Chr07:23806204..23806228 (25 bp)
GCCCCAGGGAGGACGTGATCAAGCC
LOC_Os07g39720
OsAffx.28827.1.S1_at--12--6191Chr07:23806212..23806236 (25 bp)
GAGGACGTGATCAAGCCCGCGCGCC
LOC_Os07g39720
OsAffx.28827.1.S1_at--335--4611Chr07:23806356..23806380 (25 bp)
GCGAGCCTCGTGGTGTTCGGCAAGG
LOC_Os07g39720
OsAffx.28827.1.S1_at--287--8631Chr07:23806407..23806431 (25 bp)
TGGTGGTACCTCGTGCCGATCCTGA
LOC_Os07g39720
OsAffx.28827.1.S1_at--783--6371Chr07:23806424..23806448 (25 bp)
GATCCTGACGGCCAGCTCTAATGGC
LOC_Os07g39720
OsAffx.28827.1.S1_at--298--891Chr07:23806489..23806513 (25 bp)
AGGCCGCCGTCAAGGTTCTCGGCAA
LOC_Os07g39720
OsAffx.28827.1.S1_at--417--3991Chr07:23806538..23806562 (25 bp)
CGTGACGCCATTGCTGGGTCCTTCG
LOC_Os07g39720
OsAffx.28827.1.S1_at--331--6971Chr07:23806576..23806600 (25 bp)
GTAGCTCCGGTGTCCATGAGTTGAT
LOC_Os07g39720
OsAffx.28827.1.S1_at--1119--3971Chr07:23806583..23806607 (25 bp)
CGGTGTCCATGAGTTGATCTCGCCG
LOC_Os07g39720
Target Sequence 
GAAAGGGTGGGTGCCCATCGTCGTCAAGCTCCCGCCTGAGGAGGAGGAGCAGCAGCAGCGGAAGGGAGGGAAGAACAAGC
GGAAGCAGCAGGCGGCCGCGACGTCGGCGACCTCGTCGCAGTCGTCCACGCCACCGACGTCGGAGCCCGCCAGCCCCAGG
GAGGACGTGATCAAGCCCGCGCGCCCCGCCGCCGCCGCGGCGGCGGCGGAGCCGGGGAGTGCGAAGCGGAAGGCCGGCGT
GAGGTGGTCGTGGTCGGACGTGCGGCCGCGCCACTACATGCCGTTCGTGGCGGTGCTGCTGCTGGCGAGCCTCGTGGTGT
TCGGCAAGGTGTTCGCCATCTGCTGCACCTCCGTCTGGTGGTACCTCGTGCCGATCCTGACGGCCAGCTCTAATGGCGCC
GGCGGCGCCGGCGGGGCGCACGGCGTGAGGAGATCGAAGGCCGCCGTCAAGGTTCTCGGCAAGAAGGCGAGCGACAAGAA
GATGGCCGTGACGCCATTGCTGGGTCCTTCGCACGGCAAGAGGGGTAGCTCCGGTGTCCATGAGTTGATCTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis